J6_6HCJ_001
3D structure
- PDB id
- 6HCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CAGUC*GUGCGCCGCGACCG*CGAGGGAGC*GUGCGCCGCGCUCUCC*GCCGG*CCACGCGUCCCCCGCGAGCGCACGGGGUCGGCGGCGAUG
- Length
- 88 nucleotides
- Bulged bases
- 6HCJ|1|51|C|704, 6HCJ|1|51|C|972, 6HCJ|1|51|C|1237, 6HCJ|1|51|G|1244, 6HCJ|1|51|C|1245, 6HCJ|1|51|G|1246, 6HCJ|1|51|C|1252, 6HCJ|1|51|G|1271, 6HCJ|1|51|C|1272, 6HCJ|1|51|C|1280, 6HCJ|1|51|G|1287, 6HCJ|1|51|U|1295
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HCJ|1|51|C|451
6HCJ|1|51|A|452
6HCJ|1|51|G|453
6HCJ|1|51|U|454
6HCJ|1|51|C|455
*
6HCJ|1|51|G|701
6HCJ|1|51|U|702
6HCJ|1|51|G|703
6HCJ|1|51|C|704
6HCJ|1|51|G|705
6HCJ|1|51|C|706
6HCJ|1|51|C|707
6HCJ|1|51|G|708
6HCJ|1|51|C|709
6HCJ|1|51|G|710
6HCJ|1|51|A|711
6HCJ|1|51|C|712
6HCJ|1|51|C|713
6HCJ|1|51|G|714
*
6HCJ|1|51|C|954
6HCJ|1|51|G|955
6HCJ|1|51|A|956
6HCJ|1|51|G|957
6HCJ|1|51|G|958
6HCJ|1|51|G|959
6HCJ|1|51|A|960
6HCJ|1|51|G|961
6HCJ|1|51|C|962
*
6HCJ|1|51|G|970
6HCJ|1|51|U|971
6HCJ|1|51|G|971|||A
6HCJ|1|51|C|972
6HCJ|1|51|G|973
6HCJ|1|51|C|974
6HCJ|1|51|C|975
6HCJ|1|51|G|976
6HCJ|1|51|C|977
6HCJ|1|51|G|978
6HCJ|1|51|C|979
6HCJ|1|51|U|980
6HCJ|1|51|C|981
6HCJ|1|51|U|982
6HCJ|1|51|C|983
6HCJ|1|51|C|984
*
6HCJ|1|51|G|1070
6HCJ|1|51|C|1071
6HCJ|1|51|C|1072
6HCJ|1|51|G|1073
6HCJ|1|51|G|1074
*
6HCJ|1|51|C|1236
6HCJ|1|51|C|1237
6HCJ|1|51|A|1238
6HCJ|1|51|C|1239
6HCJ|1|51|G|1244
6HCJ|1|51|C|1245
6HCJ|1|51|G|1246
6HCJ|1|51|U|1247
6HCJ|1|51|C|1248
6HCJ|1|51|C|1249
6HCJ|1|51|C|1250
6HCJ|1|51|C|1251
6HCJ|1|51|C|1252
6HCJ|1|51|G|1271
6HCJ|1|51|C|1272
6HCJ|1|51|G|1273
6HCJ|1|51|A|1274
6HCJ|1|51|G|1275
6HCJ|1|51|C|1276
6HCJ|1|51|G|1277
6HCJ|1|51|C|1278
6HCJ|1|51|A|1279
6HCJ|1|51|C|1280
6HCJ|1|51|G|1281
6HCJ|1|51|G|1282
6HCJ|1|51|G|1283
6HCJ|1|51|G|1284
6HCJ|1|51|U|1285
6HCJ|1|51|C|1286
6HCJ|1|51|G|1287
6HCJ|1|51|G|1288
6HCJ|1|51|C|1289
6HCJ|1|51|G|1290
6HCJ|1|51|G|1291
6HCJ|1|51|C|1292
6HCJ|1|51|G|1293
6HCJ|1|51|A|1294
6HCJ|1|51|U|1295
6HCJ|1|51|G|1296
Current chains
- Chain 51
- 28S ribosomal RNA
Nearby chains
- Chain C3
- uL4
- Chain E3
- 60S ribosomal protein L6
- Chain F3
- uL30
- Chain b3
- eL29
- Chain e3
- eL32
- Chain f3
- eL33
- Chain r3
- eL28
Coloring options: