J6_6HCJ_003
3D structure
- PDB id
- 6HCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CGAUG*UUCCGGG*UAAAGGAAUUGACGGA*UUGUACACACCG*CAAGGUUU*AG
- Length
- 50 nucleotides
- Bulged bases
- 6HCJ|1|A2|A|1695, 6HCJ|1|A2|C|1698, 6HCJ|1|A2|C|1701, 6HCJ|1|A2|A|1835, 6HCJ|1|A2|U|1838
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HCJ|1|A2|C|1085
6HCJ|1|A2|G|1086
6HCJ|1|A2|A|1087
6HCJ|1|A2|U|1088
6HCJ|1|A2|G|1089
*
6HCJ|1|A2|U|1160
6HCJ|1|A2|U|1161
6HCJ|1|A2|C|1162
6HCJ|1|A2|C|1163
6HCJ|1|A2|G|1164
6HCJ|1|A2|G|1165
6HCJ|1|A2|G|1166
*
6HCJ|1|A2|U|1193
6HCJ|1|A2|A|1194
6HCJ|1|A2|A|1195
6HCJ|1|A2|A|1196
6HCJ|1|A2|G|1197
6HCJ|1|A2|G|1198
6HCJ|1|A2|A|1199
6HCJ|1|A2|A|1200
6HCJ|1|A2|U|1201
6HCJ|1|A2|U|1202
6HCJ|1|A2|G|1203
6HCJ|1|A2|A|1204
6HCJ|1|A2|C|1205
6HCJ|1|A2|G|1206
6HCJ|1|A2|G|1207
6HCJ|1|A2|A|1208
*
6HCJ|1|A2|U|1691
6HCJ|1|A2|U|1692
6HCJ|1|A2|G|1693
6HCJ|1|A2|U|1694
6HCJ|1|A2|A|1695
6HCJ|1|A2|C|1696
6HCJ|1|A2|A|1697
6HCJ|1|A2|C|1698
6HCJ|1|A2|A|1699
6HCJ|1|A2|C|1700
6HCJ|1|A2|C|1701
6HCJ|1|A2|G|1702
*
6HCJ|1|A2|C|1833
6HCJ|1|A2|A|1834
6HCJ|1|A2|A|1835
6HCJ|1|A2|G|1836
6HCJ|1|A2|G|1837
6HCJ|1|A2|U|1838
6HCJ|1|A2|U|1839
6HCJ|1|A2|U|1840
*
6HCJ|1|A2|A|1860
6HCJ|1|A2|G|1861
Current chains
- Chain A2
- 18S ribosomal RNA
Nearby chains
- Chain 33
- Transfer RNA; tRNA
- Chain D2
- uS5
- Chain M2
- Ribosomal protein S11
- Chain P2
- uS11
- Chain X2
- Ribosomal protein S15a
- Chain Y2
- uS12
- Chain b2
- eS26
- Chain n3
- eL41
- Chain v3
- mRNA
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