3D structure

PDB id
6HCM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit collided di-ribosome (stalled monosome)
Experimental method
ELECTRON MICROSCOPY
Resolution
6.8 Å

Loop

Sequence
GAGAAGGGUUC*GGUCAGUCGGUC*GGAGUC*GAAUC*GGCCGUACCCAUAUC*GUCUC
Length
54 nucleotides
Bulged bases
6HCM|1|52|C|2437, 6HCM|1|52|U|2788, 6HCM|1|52|A|2789
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6HCM|1|52|G|2400
6HCM|1|52|A|2401
6HCM|1|52|G|2402
6HCM|1|52|A|2403
6HCM|1|52|A|2404
6HCM|1|52|G|2405
6HCM|1|52|G|2406
6HCM|1|52|G|2407
6HCM|1|52|U|2408
6HCM|1|52|U|2409
6HCM|1|52|C|2410
*
6HCM|1|52|G|2434
6HCM|1|52|G|2435
6HCM|1|52|U|2436
6HCM|1|52|C|2437
6HCM|1|52|A|2438
6HCM|1|52|G|2439
6HCM|1|52|U|2440
6HCM|1|52|C|2441
6HCM|1|52|G|2442
6HCM|1|52|G|2443
6HCM|1|52|U|2444
6HCM|1|52|C|2445
*
6HCM|1|52|G|2515
6HCM|1|52|G|2516
6HCM|1|52|A|2517
6HCM|1|52|G|2518
6HCM|1|52|U|2519
6HCM|1|52|C|2520
*
6HCM|1|52|G|2535
6HCM|1|52|A|2536
6HCM|1|52|A|2537
6HCM|1|52|U|2538
6HCM|1|52|C|2539
*
6HCM|1|52|G|2777
6HCM|1|52|G|2778
6HCM|1|52|C|2779
6HCM|1|52|C|2780
6HCM|1|52|G|2781
6HCM|1|52|U|2782
6HCM|1|52|A|2783
6HCM|1|52|C|2784
6HCM|1|52|C|2785
6HCM|1|52|C|2786
6HCM|1|52|A|2787
6HCM|1|52|U|2788
6HCM|1|52|A|2789
6HCM|1|52|U|2790
6HCM|1|52|C|2791
*
6HCM|1|52|G|2800
6HCM|1|52|U|2801
6HCM|1|52|C|2802
6HCM|1|52|U|2803
6HCM|1|52|C|2804

Current chains

Chain 52
28S ribosomal RNA

Nearby chains

Chain 82
5.8S ribosomal RNA; 5.8S rRNA
Chain R3
eL19
Chain X3
uL23
Chain g3
eL34
Chain h3
uL29
Chain j3
Ribosomal protein L37
Chain k3
eL38
Chain l3
eL39

Coloring options:

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