J6_6HCM_004
3D structure
- PDB id
- 6HCM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit collided di-ribosome (stalled monosome)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.8 Å
Loop
- Sequence
- CGAG*CGCAA*UGAAG*CGAGGUGGGAUC*GCGCACCACCGGCCCGUC*GGUGGAGCACGAG
- Length
- 57 nucleotides
- Bulged bases
- 6HCM|1|52|A|1497, 6HCM|1|52|C|1501
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HCM|1|52|C|1352
6HCM|1|52|G|1353
6HCM|1|52|A|1354
6HCM|1|52|G|1355
*
6HCM|1|52|C|1384
6HCM|1|52|G|1385
6HCM|1|52|C|1386
6HCM|1|52|A|1387
6HCM|1|52|A|1388
*
6HCM|1|52|U|1395
6HCM|1|52|G|1396
6HCM|1|52|A|1397
6HCM|1|52|A|1398
6HCM|1|52|G|1399
*
6HCM|1|52|C|1418
6HCM|1|52|G|1419
6HCM|1|52|A|1420
6HCM|1|52|G|1421
6HCM|1|52|G|1422
6HCM|1|52|U|1423
6HCM|1|52|G|1424
6HCM|1|52|G|1425
6HCM|1|52|G|1426
6HCM|1|52|A|1427
6HCM|1|52|U|1428
6HCM|1|52|C|1429
*
6HCM|1|52|G|1455
6HCM|1|52|C|1456
6HCM|1|52|G|1457
6HCM|1|52|C|1458
6HCM|1|52|A|1459
6HCM|1|52|C|1460
6HCM|1|52|C|1461
6HCM|1|52|A|1462
6HCM|1|52|C|1463
6HCM|1|52|C|1464
6HCM|1|52|G|1465
6HCM|1|52|G|1466
6HCM|1|52|C|1467
6HCM|1|52|C|1468
6HCM|1|52|C|1469
6HCM|1|52|G|1470
6HCM|1|52|U|1471
6HCM|1|52|C|1472
*
6HCM|1|52|G|1492
6HCM|1|52|G|1493
6HCM|1|52|U|1494
6HCM|1|52|G|1495
6HCM|1|52|G|1496
6HCM|1|52|A|1497
6HCM|1|52|G|1498
6HCM|1|52|C|1499
6HCM|1|52|A|1500
6HCM|1|52|C|1501
6HCM|1|52|G|1502
6HCM|1|52|A|1503
6HCM|1|52|G|1504
Current chains
- Chain 52
- 28S ribosomal RNA
Nearby chains
- Chain C3
- uL4
- Chain L3
- eL13
- Chain Q3
- eL18
- Chain a3
- uL15
- Chain b3
- eL29
- Chain i3
- 60S ribosomal protein L36
Coloring options: