J6_6HCM_006
3D structure
- PDB id
- 6HCM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit collided di-ribosome (stalled monosome)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.8 Å
Loop
- Sequence
- UGAGCUUGACUCUAG*UGGGGAGUUUG*CA*UGUC*GCCUCACGAUCC*GGUGUCAGAAAAGUUACCA
- Length
- 63 nucleotides
- Bulged bases
- 6HCM|1|52|G|3922, 6HCM|1|52|A|4376, 6HCM|1|52|A|4378, 6HCM|1|52|A|4379, 6HCM|1|52|A|4385
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HCM|1|52|U|3915
6HCM|1|52|G|3916
6HCM|1|52|A|3917
6HCM|1|52|G|3918
6HCM|1|52|C|3919
6HCM|1|52|U|3920
6HCM|1|52|U|3921
6HCM|1|52|G|3922
6HCM|1|52|A|3923
6HCM|1|52|C|3924
6HCM|1|52|U|3925
6HCM|1|52|C|3926
6HCM|1|52|U|3927
6HCM|1|52|A|3928
6HCM|1|52|G|3929
*
6HCM|1|52|U|4181
6HCM|1|52|G|4182
6HCM|1|52|G|4183
6HCM|1|52|G|4184
6HCM|1|52|G|4185
6HCM|1|52|A|4186
6HCM|1|52|G|4187
6HCM|1|52|U|4188
6HCM|1|52|U|4189
6HCM|1|52|U|4190
6HCM|1|52|G|4191
*
6HCM|1|52|C|4204
6HCM|1|52|A|4205
*
6HCM|1|52|U|4227
6HCM|1|52|G|4228
6HCM|1|52|U|4229
6HCM|1|52|C|4230
*
6HCM|1|52|G|4331
6HCM|1|52|C|4332
6HCM|1|52|C|4333
6HCM|1|52|U|4334
6HCM|1|52|C|4335
6HCM|1|52|A|4336
6HCM|1|52|C|4337
6HCM|1|52|G|4338
6HCM|1|52|A|4339
6HCM|1|52|U|4340
6HCM|1|52|C|4341
6HCM|1|52|C|4342
*
6HCM|1|52|G|4370
6HCM|1|52|G|4371
6HCM|1|52|U|4372
6HCM|1|52|G|4373
6HCM|1|52|U|4374
6HCM|1|52|C|4375
6HCM|1|52|A|4376
6HCM|1|52|G|4377
6HCM|1|52|A|4378
6HCM|1|52|A|4379
6HCM|1|52|A|4380
6HCM|1|52|A|4381
6HCM|1|52|G|4382
6HCM|1|52|U|4383
6HCM|1|52|U|4384
6HCM|1|52|A|4385
6HCM|1|52|C|4386
6HCM|1|52|C|4387
6HCM|1|52|A|4388
Current chains
- Chain 52
- 28S ribosomal RNA
Nearby chains
- Chain 1
- nascent chain
- Chain 23
- Transfer RNA; tRNA
- Chain A3
- Ribosomal protein L8
- Chain N3
- Ribosomal protein L15
- Chain Q3
- eL18
- Chain T3
- eL21
- Chain a3
- uL15
- Chain o3
- eL42
Coloring options: