J6_6HCQ_001

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

CAGUC*GUGCGCCGCGACCG*CGAGGGAGC*GUGCGCCGCGCUCUCC*GCCGG*CCACGCGUCCCCCGCGAGCGCACGGGGUCGGCGGCGAUG

Length

88 nucleotides

Bulged bases

6HCQ|1|51|C|704, 6HCQ|1|51|C|972, 6HCQ|1|51|C|1237, 6HCQ|1|51|G|1244, 6HCQ|1|51|C|1245, 6HCQ|1|51|G|1246, 6HCQ|1|51|C|1252, 6HCQ|1|51|G|1271, 6HCQ|1|51|C|1272, 6HCQ|1|51|C|1280, 6HCQ|1|51|G|1287, 6HCQ|1|51|U|1295

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCQ|1|51|C|451
6HCQ|1|51|A|452
6HCQ|1|51|G|453
6HCQ|1|51|U|454
6HCQ|1|51|C|455
*
6HCQ|1|51|G|701
6HCQ|1|51|U|702
6HCQ|1|51|G|703
6HCQ|1|51|C|704
6HCQ|1|51|G|705
6HCQ|1|51|C|706
6HCQ|1|51|C|707
6HCQ|1|51|G|708
6HCQ|1|51|C|709
6HCQ|1|51|G|710
6HCQ|1|51|A|711
6HCQ|1|51|C|712
6HCQ|1|51|C|713
6HCQ|1|51|G|714
*
6HCQ|1|51|C|954
6HCQ|1|51|G|955
6HCQ|1|51|A|956
6HCQ|1|51|G|957
6HCQ|1|51|G|958
6HCQ|1|51|G|959
6HCQ|1|51|A|960
6HCQ|1|51|G|961
6HCQ|1|51|C|962
*
6HCQ|1|51|G|970
6HCQ|1|51|U|971
6HCQ|1|51|G|971|||A
6HCQ|1|51|C|972
6HCQ|1|51|G|973
6HCQ|1|51|C|974
6HCQ|1|51|C|975
6HCQ|1|51|G|976
6HCQ|1|51|C|977
6HCQ|1|51|G|978
6HCQ|1|51|C|979
6HCQ|1|51|U|980
6HCQ|1|51|C|981
6HCQ|1|51|U|982
6HCQ|1|51|C|983
6HCQ|1|51|C|984
*
6HCQ|1|51|G|1070
6HCQ|1|51|C|1071
6HCQ|1|51|C|1072
6HCQ|1|51|G|1073
6HCQ|1|51|G|1074
*
6HCQ|1|51|C|1236
6HCQ|1|51|C|1237
6HCQ|1|51|A|1238
6HCQ|1|51|C|1239
6HCQ|1|51|G|1244
6HCQ|1|51|C|1245
6HCQ|1|51|G|1246
6HCQ|1|51|U|1247
6HCQ|1|51|C|1248
6HCQ|1|51|C|1249
6HCQ|1|51|C|1250
6HCQ|1|51|C|1251
6HCQ|1|51|C|1252
6HCQ|1|51|G|1271
6HCQ|1|51|C|1272
6HCQ|1|51|G|1273
6HCQ|1|51|A|1274
6HCQ|1|51|G|1275
6HCQ|1|51|C|1276
6HCQ|1|51|G|1277
6HCQ|1|51|C|1278
6HCQ|1|51|A|1279
6HCQ|1|51|C|1280
6HCQ|1|51|G|1281
6HCQ|1|51|G|1282
6HCQ|1|51|G|1283
6HCQ|1|51|G|1284
6HCQ|1|51|U|1285
6HCQ|1|51|C|1286
6HCQ|1|51|G|1287
6HCQ|1|51|G|1288
6HCQ|1|51|C|1289
6HCQ|1|51|G|1290
6HCQ|1|51|G|1291
6HCQ|1|51|C|1292
6HCQ|1|51|G|1293
6HCQ|1|51|A|1294
6HCQ|1|51|U|1295
6HCQ|1|51|G|1296

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain C3

uL4

Chain E3

60S ribosomal protein L6

Chain F3

uL30

Chain b3

eL29

Chain e3

eL32

Chain f3

eL33

Chain r3

eL28