J6_6HCQ_003

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

CGAUG*UUCCGGG*UAAAGGAAUUGACGGA*UUGUACACACCG*CAAGGUUU*AG

Length

50 nucleotides

Bulged bases

6HCQ|1|A2|A|1695, 6HCQ|1|A2|C|1698, 6HCQ|1|A2|C|1701, 6HCQ|1|A2|A|1835, 6HCQ|1|A2|U|1838

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCQ|1|A2|C|1085
6HCQ|1|A2|G|1086
6HCQ|1|A2|A|1087
6HCQ|1|A2|U|1088
6HCQ|1|A2|G|1089
*
6HCQ|1|A2|U|1160
6HCQ|1|A2|U|1161
6HCQ|1|A2|C|1162
6HCQ|1|A2|C|1163
6HCQ|1|A2|G|1164
6HCQ|1|A2|G|1165
6HCQ|1|A2|G|1166
*
6HCQ|1|A2|U|1193
6HCQ|1|A2|A|1194
6HCQ|1|A2|A|1195
6HCQ|1|A2|A|1196
6HCQ|1|A2|G|1197
6HCQ|1|A2|G|1198
6HCQ|1|A2|A|1199
6HCQ|1|A2|A|1200
6HCQ|1|A2|U|1201
6HCQ|1|A2|U|1202
6HCQ|1|A2|G|1203
6HCQ|1|A2|A|1204
6HCQ|1|A2|C|1205
6HCQ|1|A2|G|1206
6HCQ|1|A2|G|1207
6HCQ|1|A2|A|1208
*
6HCQ|1|A2|U|1691
6HCQ|1|A2|U|1692
6HCQ|1|A2|G|1693
6HCQ|1|A2|U|1694
6HCQ|1|A2|A|1695
6HCQ|1|A2|C|1696
6HCQ|1|A2|A|1697
6HCQ|1|A2|C|1698
6HCQ|1|A2|A|1699
6HCQ|1|A2|C|1700
6HCQ|1|A2|C|1701
6HCQ|1|A2|G|1702
*
6HCQ|1|A2|C|1833
6HCQ|1|A2|A|1834
6HCQ|1|A2|A|1835
6HCQ|1|A2|G|1836
6HCQ|1|A2|G|1837
6HCQ|1|A2|U|1838
6HCQ|1|A2|U|1839
6HCQ|1|A2|U|1840
*
6HCQ|1|A2|A|1860
6HCQ|1|A2|G|1861

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain 33

Transfer RNA; tRNA

Chain D2

eS1

Chain M2

Ribosomal protein S11

Chain P2

uS11

Chain X2

Ribosomal protein S15a

Chain Y2

uS12

Chain b2

eS26

Chain n3

eL41

Chain v3

mRNA