J6_6HMA_002
3D structure
- PDB id
- 6HMA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- UUUA*UUUG*CG*CGCU*ACUUAGUGAUCC*GCUCAACGGAUAAAA
- Length
- 41 nucleotides
- Bulged bases
- 6HMA|1|A|U|2103, 6HMA|1|A|U|2417, 6HMA|1|A|G|2455, 6HMA|1|A|A|2457, 6HMA|1|A|U|2458, 6HMA|1|A|A|2460
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HMA|1|A|U|2101
6HMA|1|A|U|2102
6HMA|1|A|U|2103
6HMA|1|A|A|2104
*
6HMA|1|A|U|2270
6HMA|1|A|U|2271
6HMA|1|A|U|2272
6HMA|1|A|G|2273
*
6HMA|1|A|C|2285
6HMA|1|A|G|2286
*
6HMA|1|A|C|2308
6HMA|1|A|G|2309
6HMA|1|A|C|2310
6HMA|1|A|U|2311
*
6HMA|1|A|A|2411
6HMA|1|A|C|2412
6HMA|1|A|U|2413
6HMA|1|A|U|2414
6HMA|1|A|A|2415
6HMA|1|A|G|2416
6HMA|1|A|U|2417
6HMA|1|A|G|2418
6HMA|1|A|A|2419
6HMA|1|A|U|2420
6HMA|1|A|C|2421
6HMA|1|A|C|2422
*
6HMA|1|A|G|2448
6HMA|1|A|C|2449
6HMA|1|A|U|2450
6HMA|1|A|C|2451
6HMA|1|A|A|2452
6HMA|1|A|A|2453
6HMA|1|A|C|2454
6HMA|1|A|G|2455
6HMA|1|A|G|2456
6HMA|1|A|A|2457
6HMA|1|A|U|2458
6HMA|1|A|A|2459
6HMA|1|A|A|2460
6HMA|1|A|A|2461
6HMA|1|A|A|2462
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 1
- 50S ribosomal protein L33
- Chain 3
- 50S ribosomal protein L35
- Chain C
- 50S ribosomal protein L2
- Chain J
- 50S ribosomal protein L15
- Chain U
- 50S ribosomal protein L27
- Chain V
- 50S ribosomal protein L28
Coloring options: