Loop J6_6I7O

3D structure

PDB id: 6I7O (explore in PDB, NAKB, or RNA 3D Hub)
Description: The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.3 Å

Loop

Sequence: GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC
Length: 42 nucleotides
Bulged bases: 6I7O|1|BQ|A|67, 6I7O|1|BQ|U|329, 6I7O|1|BS|U|34
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6I7O|1|BQ|G|22
6I7O|1|BQ|A|23
6I7O|1|BQ|G|24
6I7O|1|BQ|U|25
6I7O|1|BQ|A|26
6I7O|1|BQ|C|27
*
6I7O|1|BQ|G|58
6I7O|1|BQ|G|59
6I7O|1|BQ|A|60
6I7O|1|BQ|A|61
6I7O|1|BQ|A|62
6I7O|1|BQ|A|63
6I7O|1|BQ|G|64
6I7O|1|BQ|A|65
6I7O|1|BQ|A|66
6I7O|1|BQ|A|67
6I7O|1|BQ|C|68
*
6I7O|1|BQ|G|75
6I7O|1|BQ|G|76
6I7O|1|BQ|A|77
6I7O|1|BQ|U|78
6I7O|1|BQ|U|79
*
6I7O|1|BQ|A|106
6I7O|1|BQ|A|107
6I7O|1|BQ|A|108
6I7O|1|BQ|A|109
6I7O|1|BQ|G|110
*
6I7O|1|BQ|C|321
6I7O|1|BQ|U|322
6I7O|1|BQ|A|323
6I7O|1|BQ|A|324
6I7O|1|BQ|A|325
6I7O|1|BQ|U|326
6I7O|1|BQ|A|327
6I7O|1|BQ|U|328
6I7O|1|BQ|U|329
6I7O|1|BQ|G|330
6I7O|1|BQ|G|331
*
6I7O|1|BS|C|32
6I7O|1|BS|A|33
6I7O|1|BS|U|34
6I7O|1|BS|C|35

Current chains

Chain BQ: 25S ribosomal RNA
Chain BS: 5.8S ribosomal RNA

Nearby chains

Chain AC: 60S ribosomal protein L36-A
Chain AF: 60S ribosomal protein L37-A
Chain AJ: 60S ribosomal protein L13-A
Chain AQ: 60S ribosomal protein L15-A
Chain BE: 60S ribosomal protein L4-A
Chain BP: 60S ribosomal protein L35-A

J6_6I7O_001