J6_6I7O_002

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

UUGA*UUUG*CA*UGUC*GCCUAUCGAUCC*GGUGCCAGAAAA

Length

38 nucleotides

Bulged bases

6I7O|1|BQ|G|2418, 6I7O|1|BQ|A|2799, 6I7O|1|BQ|A|2801, 6I7O|1|BQ|A|2802

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6I7O|1|BQ|U|2416
6I7O|1|BQ|U|2417
6I7O|1|BQ|G|2418
6I7O|1|BQ|A|2419
*
6I7O|1|BQ|U|2611
6I7O|1|BQ|U|2612
6I7O|1|BQ|U|2613
6I7O|1|BQ|G|2614
*
6I7O|1|BQ|C|2627
6I7O|1|BQ|A|2628
*
6I7O|1|BQ|U|2650
6I7O|1|BQ|G|2651
6I7O|1|BQ|U|2652
6I7O|1|BQ|C|2653
*
6I7O|1|BQ|G|2754
6I7O|1|BQ|C|2755
6I7O|1|BQ|C|2756
6I7O|1|BQ|U|2757
6I7O|1|BQ|A|2758
6I7O|1|BQ|U|2759
6I7O|1|BQ|C|2760
6I7O|1|BQ|G|2761
6I7O|1|BQ|A|2762
6I7O|1|BQ|U|2763
6I7O|1|BQ|C|2764
6I7O|1|BQ|C|2765
*
6I7O|1|BQ|G|2793
6I7O|1|BQ|G|2794
6I7O|1|BQ|U|2795
6I7O|1|BQ|G|2796
6I7O|1|BQ|C|2797
6I7O|1|BQ|C|2798
6I7O|1|BQ|A|2799
6I7O|1|BQ|G|2800
6I7O|1|BQ|A|2801
6I7O|1|BQ|A|2802
6I7O|1|BQ|A|2803
6I7O|1|BQ|A|2804

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AP

60S ribosomal protein L42-A

Chain AQ

60S ribosomal protein L15-A

Chain AR

60S ribosomal protein L28

Chain AV

60S ribosomal protein L29

Chain AW

60S ribosomal protein L2-A

Chain BB

60S ribosomal protein L18-A

Chain BJ

60S ribosomal protein L21-A

Chain m

Transfer RNA; tRNA