J6_6I7O_004
3D structure
- PDB id
- 6I7O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- UUGA*UUUG*CA*UGUC*GCCUAUCGAUCC*GGUGCCAGAAAA
- Length
- 38 nucleotides
- Bulged bases
- 6I7O|1|YQ|G|2418, 6I7O|1|YQ|A|2799, 6I7O|1|YQ|A|2801, 6I7O|1|YQ|A|2802
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6I7O|1|YQ|U|2416
6I7O|1|YQ|U|2417
6I7O|1|YQ|G|2418
6I7O|1|YQ|A|2419
*
6I7O|1|YQ|U|2611
6I7O|1|YQ|U|2612
6I7O|1|YQ|U|2613
6I7O|1|YQ|G|2614
*
6I7O|1|YQ|C|2627
6I7O|1|YQ|A|2628
*
6I7O|1|YQ|U|2650
6I7O|1|YQ|G|2651
6I7O|1|YQ|U|2652
6I7O|1|YQ|C|2653
*
6I7O|1|YQ|G|2754
6I7O|1|YQ|C|2755
6I7O|1|YQ|C|2756
6I7O|1|YQ|U|2757
6I7O|1|YQ|A|2758
6I7O|1|YQ|U|2759
6I7O|1|YQ|C|2760
6I7O|1|YQ|G|2761
6I7O|1|YQ|A|2762
6I7O|1|YQ|U|2763
6I7O|1|YQ|C|2764
6I7O|1|YQ|C|2765
*
6I7O|1|YQ|G|2793
6I7O|1|YQ|G|2794
6I7O|1|YQ|U|2795
6I7O|1|YQ|G|2796
6I7O|1|YQ|C|2797
6I7O|1|YQ|C|2798
6I7O|1|YQ|A|2799
6I7O|1|YQ|G|2800
6I7O|1|YQ|A|2801
6I7O|1|YQ|A|2802
6I7O|1|YQ|A|2803
6I7O|1|YQ|A|2804
Current chains
- Chain YQ
- 25S ribosomal RNA
Nearby chains
- Chain XP
- 60S ribosomal protein L42-A
- Chain XQ
- 60S ribosomal protein L15-A
- Chain XR
- 60S ribosomal protein L28
- Chain XV
- 60S ribosomal protein L29
- Chain XW
- 60S ribosomal protein L2-A
- Chain YB
- 60S ribosomal protein L18-A
- Chain YJ
- 60S ribosomal protein L21-A
- Chain mb
- Transfer RNA; tRNA
Coloring options: