J6_6IP5_001
3D structure
- PDB id
- 6IP5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGCGAC*GAGAAGAAAC*GGAUU*AAGAG*CUAAAUAC*GUC
- Length
- 37 nucleotides
- Bulged bases
- 6IP5|1|1A|A|66, 6IP5|1|1C|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6IP5|1|1A|G|21
6IP5|1|1A|G|22
6IP5|1|1A|C|23
6IP5|1|1A|G|24
6IP5|1|1A|A|25
6IP5|1|1A|C|26
*
6IP5|1|1A|G|58
6IP5|1|1A|A|59
6IP5|1|1A|G|60
6IP5|1|1A|A|61
6IP5|1|1A|A|62
6IP5|1|1A|G|63
6IP5|1|1A|A|64
6IP5|1|1A|A|65
6IP5|1|1A|A|66
6IP5|1|1A|C|67
*
6IP5|1|1A|G|74
6IP5|1|1A|G|75
6IP5|1|1A|A|76
6IP5|1|1A|U|77
6IP5|1|1A|U|78
*
6IP5|1|1A|A|105
6IP5|1|1A|A|106
6IP5|1|1A|G|107
6IP5|1|1A|A|108
6IP5|1|1A|G|109
*
6IP5|1|1A|C|332
6IP5|1|1A|U|333
6IP5|1|1A|A|334
6IP5|1|1A|A|335
6IP5|1|1A|A|336
6IP5|1|1A|U|337
6IP5|1|1A|A|338
6IP5|1|1A|C|339
*
6IP5|1|1C|G|33
6IP5|1|1C|U|34
6IP5|1|1C|C|35
Current chains
- Chain 1A
- 28S ribosomal RNA
- Chain 1C
- 5.8S ribosomal RNA
Nearby chains
- Chain 2F
- 60S ribosomal protein L13
- Chain 2H
- 60S ribosomal protein L15
- Chain 2b
- 60S ribosomal protein L35
- Chain 2c
- 60S ribosomal protein L36
- Chain 2d
- 60S ribosomal protein L37
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