J6_6IP6_002
3D structure
- PDB id
- 6IP6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- CGAG*CGCAA*UGAAG*CGAG*CGG*CACGAG
- Length
- 27 nucleotides
- Bulged bases
- 6IP6|1|1A|C|1501, 6IP6|1|1A|G|1502
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6IP6|1|1A|C|1352
6IP6|1|1A|G|1353
6IP6|1|1A|A|1354
6IP6|1|1A|G|1355
*
6IP6|1|1A|C|1384
6IP6|1|1A|G|1385
6IP6|1|1A|C|1386
6IP6|1|1A|A|1387
6IP6|1|1A|A|1388
*
6IP6|1|1A|U|1395
6IP6|1|1A|G|1396
6IP6|1|1A|A|1397
6IP6|1|1A|A|1398
6IP6|1|1A|G|1399
*
6IP6|1|1A|C|1418
6IP6|1|1A|G|1419
6IP6|1|1A|A|1420
6IP6|1|1A|G|1421
*
6IP6|1|1A|C|1464
6IP6|1|1A|G|1465
6IP6|1|1A|G|1466
*
6IP6|1|1A|C|1499
6IP6|1|1A|A|1500
6IP6|1|1A|C|1501
6IP6|1|1A|G|1502
6IP6|1|1A|A|1503
6IP6|1|1A|G|1504
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 1F
- 60S ribosomal protein L4
- Chain 2F
- 60S ribosomal protein L13
- Chain 2K
- 60S ribosomal protein L18
- Chain 2U
- 60S ribosomal protein L27a
- Chain 2V
- 60S ribosomal protein L29
- Chain 2c
- 60S ribosomal protein L36
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