J6_6N1D_001

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

6N1D|1|A23S|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6N1D|1|A23S|G|45
6N1D|1|A23S|C|46
*
6N1D|1|A23S|G|179
6N1D|1|A23S|G|180
6N1D|1|A23S|A|181
6N1D|1|A23S|A|182
6N1D|1|A23S|C|183
*
6N1D|1|A23S|G|214
6N1D|1|A23S|G|215
6N1D|1|A23S|A|216
6N1D|1|A23S|G|217
6N1D|1|A23S|A|218
6N1D|1|A23S|G|219
6N1D|1|A23S|G|220
6N1D|1|A23S|A|221
6N1D|1|A23S|A|222
6N1D|1|A23S|A|223
6N1D|1|A23S|G|224
*
6N1D|1|A23S|C|231
6N1D|1|A23S|G|232
6N1D|1|A23S|A|233
6N1D|1|A23S|C|234
6N1D|1|A23S|U|235
*
6N1D|1|A23S|A|262
6N1D|1|A23S|C|263
6N1D|1|A23S|C|264
6N1D|1|A23S|A|265
6N1D|1|A23S|G|266
*
6N1D|1|A23S|C|426
6N1D|1|A23S|U|427
6N1D|1|A23S|A|428
6N1D|1|A23S|A|429
6N1D|1|A23S|G|430
6N1D|1|A23S|U|431
6N1D|1|A23S|A|432
6N1D|1|A23S|C|433

Current chains

Chain A23S

23S rRNA

Nearby chains

Chain AL34

50S ribosomal protein L34