J6_6N8J_001
3D structure
- PDB id
- 6N8J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GAGUACC*GAGGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC
- Length
- 45 nucleotides
- Bulged bases
- 6N8J|1|1|A|67, 6N8J|1|1|U|329
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6N8J|1|1|G|22
6N8J|1|1|A|23
6N8J|1|1|G|24
6N8J|1|1|U|25
6N8J|1|1|A|26
6N8J|1|1|C|27
6N8J|1|1|C|28
*
6N8J|1|1|G|56
6N8J|1|1|A|57
6N8J|1|1|G|58
6N8J|1|1|G|59
6N8J|1|1|A|60
6N8J|1|1|A|61
6N8J|1|1|A|62
6N8J|1|1|A|63
6N8J|1|1|G|64
6N8J|1|1|A|65
6N8J|1|1|A|66
6N8J|1|1|A|67
6N8J|1|1|C|68
*
6N8J|1|1|G|75
6N8J|1|1|G|76
6N8J|1|1|A|77
6N8J|1|1|U|78
6N8J|1|1|U|79
*
6N8J|1|1|A|106
6N8J|1|1|A|107
6N8J|1|1|A|108
6N8J|1|1|A|109
6N8J|1|1|G|110
*
6N8J|1|1|C|321
6N8J|1|1|U|322
6N8J|1|1|A|323
6N8J|1|1|A|324
6N8J|1|1|A|325
6N8J|1|1|U|326
6N8J|1|1|A|327
6N8J|1|1|U|328
6N8J|1|1|U|329
6N8J|1|1|G|330
6N8J|1|1|G|331
*
6N8J|1|3|C|32
6N8J|1|3|A|33
6N8J|1|3|U|34
6N8J|1|3|C|35
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
- Chain 3
- 5.8S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L4-A
- Chain L
- 60S ribosomal protein L13-A
- Chain N
- 60S ribosomal protein L15-A
- Chain h
- 60S ribosomal protein L35-A
- Chain i
- 60S ribosomal protein L36-A
- Chain j
- 60S ribosomal protein L37-A
Coloring options: