J6_6N8J_002
3D structure
- PDB id
- 6N8J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CUUGAC*GUUUG*CA*UGUC*GCCUAUCGAUCC*GGUGCCAGAAAAG
- Length
- 42 nucleotides
- Bulged bases
- 6N8J|1|1|G|2418, 6N8J|1|1|A|2799, 6N8J|1|1|A|2801, 6N8J|1|1|A|2802
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6N8J|1|1|C|2415
6N8J|1|1|U|2416
6N8J|1|1|U|2417
6N8J|1|1|G|2418
6N8J|1|1|A|2419
6N8J|1|1|C|2420
*
6N8J|1|1|G|2610
6N8J|1|1|U|2611
6N8J|1|1|U|2612
6N8J|1|1|U|2613
6N8J|1|1|G|2614
*
6N8J|1|1|C|2627
6N8J|1|1|A|2628
*
6N8J|1|1|U|2650
6N8J|1|1|G|2651
6N8J|1|1|U|2652
6N8J|1|1|C|2653
*
6N8J|1|1|G|2754
6N8J|1|1|C|2755
6N8J|1|1|C|2756
6N8J|1|1|U|2757
6N8J|1|1|A|2758
6N8J|1|1|U|2759
6N8J|1|1|C|2760
6N8J|1|1|G|2761
6N8J|1|1|A|2762
6N8J|1|1|U|2763
6N8J|1|1|C|2764
6N8J|1|1|C|2765
*
6N8J|1|1|G|2793
6N8J|1|1|G|2794
6N8J|1|1|U|2795
6N8J|1|1|G|2796
6N8J|1|1|C|2797
6N8J|1|1|C|2798
6N8J|1|1|A|2799
6N8J|1|1|G|2800
6N8J|1|1|A|2801
6N8J|1|1|A|2802
6N8J|1|1|A|2803
6N8J|1|1|A|2804
6N8J|1|1|G|2805
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain A
- 60S ribosomal protein L2-A
- Chain N
- 60S ribosomal protein L15-A
- Chain a
- 60S ribosomal protein L28
- Chain m
- Nucleolar GTP-binding protein 2
- Chain q
- 60S ribosomal protein L42-A
Coloring options: