J6_6OGI_001

3D structure

PDB id

6OGI (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

6OGI|1|1|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OGI|1|1|G|45
6OGI|1|1|G|46
*
6OGI|1|1|C|179
6OGI|1|1|G|180
6OGI|1|1|A|181
6OGI|1|1|A|182
6OGI|1|1|C|183
*
6OGI|1|1|G|214
6OGI|1|1|G|215
6OGI|1|1|A|216
6OGI|1|1|A|217
6OGI|1|1|A|218
6OGI|1|1|A|219
6OGI|1|1|G|220
6OGI|1|1|A|221
6OGI|1|1|A|222
6OGI|1|1|A|223
6OGI|1|1|U|224
*
6OGI|1|1|A|231
6OGI|1|1|G|232
6OGI|1|1|A|233
6OGI|1|1|U|234
6OGI|1|1|U|235
*
6OGI|1|1|A|262
6OGI|1|1|G|263
6OGI|1|1|C|264
6OGI|1|1|A|265
6OGI|1|1|G|266
*
6OGI|1|1|C|426
6OGI|1|1|U|427
6OGI|1|1|A|428
6OGI|1|1|A|429
6OGI|1|1|A|430
6OGI|1|1|U|431
6OGI|1|1|A|432
6OGI|1|1|C|433

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L34