J6_6OIG_001
3D structure
- PDB id
- 6OIG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Subunit joining exposes nascent pre-40S rRNA for processing and quality control
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GAGUACC*GAGGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGGCG*CGCAUC
- Length
- 49 nucleotides
- Bulged bases
- 6OIG|1|5|A|67, 6OIG|1|5|A|109, 6OIG|1|5|U|329, 6OIG|1|8|U|34
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6OIG|1|5|G|22
6OIG|1|5|A|23
6OIG|1|5|G|24
6OIG|1|5|U|25
6OIG|1|5|A|26
6OIG|1|5|C|27
6OIG|1|5|C|28
*
6OIG|1|5|G|56
6OIG|1|5|A|57
6OIG|1|5|G|58
6OIG|1|5|G|59
6OIG|1|5|A|60
6OIG|1|5|A|61
6OIG|1|5|A|62
6OIG|1|5|A|63
6OIG|1|5|G|64
6OIG|1|5|A|65
6OIG|1|5|A|66
6OIG|1|5|A|67
6OIG|1|5|C|68
*
6OIG|1|5|G|75
6OIG|1|5|G|76
6OIG|1|5|A|77
6OIG|1|5|U|78
6OIG|1|5|U|79
*
6OIG|1|5|A|106
6OIG|1|5|A|107
6OIG|1|5|A|108
6OIG|1|5|A|109
6OIG|1|5|G|110
*
6OIG|1|5|C|321
6OIG|1|5|U|322
6OIG|1|5|A|323
6OIG|1|5|A|324
6OIG|1|5|A|325
6OIG|1|5|U|326
6OIG|1|5|A|327
6OIG|1|5|U|328
6OIG|1|5|U|329
6OIG|1|5|G|330
6OIG|1|5|G|331
6OIG|1|5|C|332
6OIG|1|5|G|333
*
6OIG|1|8|C|30
6OIG|1|8|G|31
6OIG|1|8|C|32
6OIG|1|8|A|33
6OIG|1|8|U|34
6OIG|1|8|C|35
Current chains
- Chain 5
- 25S ribosomal RNA
- Chain 8
- 5.8S ribosomal RNA
Nearby chains
- Chain L
- 60S ribosomal protein L13-A
- Chain N
- 60S ribosomal protein L15-A
- Chain Y
- 60S ribosomal protein L26-A
- Chain h
- 60S ribosomal protein L35-A
- Chain i
- 60S ribosomal protein L36-A
- Chain j
- 60S ribosomal protein L37-A
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