Loop J6_6OIG

3D structure

PDB id: 6OIG (explore in PDB, NAKB, or RNA 3D Hub)
Description: Subunit joining exposes nascent pre-40S rRNA for processing and quality control
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å

Loop

Sequence: UUGA*UUUG*CA*UGUC*GCCUAUCGAUCC*GGUGCCAGAAAA
Length: 38 nucleotides
Bulged bases: 6OIG|1|5|G|2418, 6OIG|1|5|A|2758, 6OIG|1|5|C|2760, 6OIG|1|5|A|2799, 6OIG|1|5|A|2801, 6OIG|1|5|A|2802
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6OIG|1|5|U|2416
6OIG|1|5|U|2417
6OIG|1|5|G|2418
6OIG|1|5|A|2419
*
6OIG|1|5|U|2611
6OIG|1|5|U|2612
6OIG|1|5|U|2613
6OIG|1|5|G|2614
*
6OIG|1|5|C|2627
6OIG|1|5|A|2628
*
6OIG|1|5|U|2650
6OIG|1|5|G|2651
6OIG|1|5|U|2652
6OIG|1|5|C|2653
*
6OIG|1|5|G|2754
6OIG|1|5|C|2755
6OIG|1|5|C|2756
6OIG|1|5|U|2757
6OIG|1|5|A|2758
6OIG|1|5|U|2759
6OIG|1|5|C|2760
6OIG|1|5|G|2761
6OIG|1|5|A|2762
6OIG|1|5|U|2763
6OIG|1|5|C|2764
6OIG|1|5|C|2765
*
6OIG|1|5|G|2793
6OIG|1|5|G|2794
6OIG|1|5|U|2795
6OIG|1|5|G|2796
6OIG|1|5|C|2797
6OIG|1|5|C|2798
6OIG|1|5|A|2799
6OIG|1|5|G|2800
6OIG|1|5|A|2801
6OIG|1|5|A|2802
6OIG|1|5|A|2803
6OIG|1|5|A|2804

Current chains

Chain 5: 25S ribosomal RNA

Nearby chains

Chain A: 60S ribosomal protein L2-A
Chain Q: 60S ribosomal protein L18-A
Chain T: 60S ribosomal protein L21-A
Chain a: 60S ribosomal protein L28
Chain o: 60S ribosomal protein L42-A

J6_6OIG_002