3D structure

PDB id
6P5J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UUGA*UUUG*CA*UGUC*GCCUCACGAUCC*GGUGUCAGAAAA
Length
38 nucleotides
Bulged bases
6P5J|1|5|G|3922, 6P5J|1|5|C|4337, 6P5J|1|5|A|4376, 6P5J|1|5|A|4378, 6P5J|1|5|A|4379
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6P5J|1|5|U|3920
6P5J|1|5|U|3921
6P5J|1|5|G|3922
6P5J|1|5|A|3923
*
6P5J|1|5|U|4188
6P5J|1|5|U|4189
6P5J|1|5|U|4190
6P5J|1|5|G|4191
*
6P5J|1|5|C|4204
6P5J|1|5|A|4205
*
6P5J|1|5|U|4227
6P5J|1|5|G|4228
6P5J|1|5|U|4229
6P5J|1|5|C|4230
*
6P5J|1|5|G|4331
6P5J|1|5|C|4332
6P5J|1|5|C|4333
6P5J|1|5|U|4334
6P5J|1|5|C|4335
6P5J|1|5|A|4336
6P5J|1|5|C|4337
6P5J|1|5|G|4338
6P5J|1|5|A|4339
6P5J|1|5|U|4340
6P5J|1|5|C|4341
6P5J|1|5|C|4342
*
6P5J|1|5|G|4370
6P5J|1|5|G|4371
6P5J|1|5|U|4372
6P5J|1|5|G|4373
6P5J|1|5|U|4374
6P5J|1|5|C|4375
6P5J|1|5|A|4376
6P5J|1|5|G|4377
6P5J|1|5|A|4378
6P5J|1|5|A|4379
6P5J|1|5|A|4380
6P5J|1|5|A|4381

Current chains

Chain 5
28S rRNA

Nearby chains

Chain AA
uL2
Chain AN
eL15
Chain AQ
eL18
Chain AT
eL21
Chain Aa
uL15
Chain Ab
eL29
Chain Ao
eL42

Coloring options:

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