J6_6Q98_004
3D structure
- PDB id
- 6Q98 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- GUGCAUGCCGAGGGGC*GCAAAAAAUAGUCGCAAACGACGAAAACUACG*CCCU*AGGUCAAACCCAAAAGAGAUCGC*GUUAAAACUUAAUCAGGCUAGUUUGUUAGUGG*CAGCUGGCAAGCGAAUGUAAAGACUGACUAAGCAUGUAGUAC
- Length
- 149 nucleotides
- Bulged bases
- 6Q98|1|4|G|54, 6Q98|1|4|A|80, 6Q98|1|4|A|81, 6Q98|1|4|A|82, 6Q98|1|4|A|83, 6Q98|1|4|A|84, 6Q98|1|4|U|88, 6Q98|1|4|C|89, 6Q98|1|4|G|90, 6Q98|1|4|A|93, 6Q98|1|4|A|94, 6Q98|1|4|C|95, 6Q98|1|4|G|96, 6Q98|1|4|A|97, 6Q98|1|4|C|98, 6Q98|1|4|G|99, 6Q98|1|4|A|100, 6Q98|1|4|A|101, 6Q98|1|4|A|102, 6Q98|1|4|A|103, 6Q98|1|4|C|104, 6Q98|1|4|U|105, 6Q98|1|4|A|106, 6Q98|1|4|C|107, 6Q98|1|4|C|183, 6Q98|1|4|A|184, 6Q98|1|4|U|230, 6Q98|1|4|A|233, 6Q98|1|4|U|237, 6Q98|1|4|A|238, 6Q98|1|4|A|239, 6Q98|1|4|A|285, 6Q98|1|4|A|286, 6Q98|1|4|U|287, 6Q98|1|4|U|308
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6Q98|1|4|G|41
6Q98|1|4|U|42
6Q98|1|4|G|43
6Q98|1|4|C|44
6Q98|1|4|A|45
6Q98|1|4|U|46
6Q98|1|4|G|47
6Q98|1|4|C|48
6Q98|1|4|C|49
6Q98|1|4|G|50
6Q98|1|4|A|51
6Q98|1|4|G|52
6Q98|1|4|G|53
6Q98|1|4|G|54
6Q98|1|4|G|55
6Q98|1|4|C|56
*
6Q98|1|4|G|77
6Q98|1|4|C|78
6Q98|1|4|A|79
6Q98|1|4|A|80
6Q98|1|4|A|81
6Q98|1|4|A|82
6Q98|1|4|A|83
6Q98|1|4|A|84
6Q98|1|4|U|85
6Q98|1|4|A|86
6Q98|1|4|G|87
6Q98|1|4|U|88
6Q98|1|4|C|89
6Q98|1|4|G|90
6Q98|1|4|C|91
6Q98|1|4|A|92
6Q98|1|4|A|93
6Q98|1|4|A|94
6Q98|1|4|C|95
6Q98|1|4|G|96
6Q98|1|4|A|97
6Q98|1|4|C|98
6Q98|1|4|G|99
6Q98|1|4|A|100
6Q98|1|4|A|101
6Q98|1|4|A|102
6Q98|1|4|A|103
6Q98|1|4|C|104
6Q98|1|4|U|105
6Q98|1|4|A|106
6Q98|1|4|C|107
6Q98|1|4|G|108
*
6Q98|1|4|C|137
6Q98|1|4|C|138
6Q98|1|4|C|139
6Q98|1|4|U|140
*
6Q98|1|4|A|179
6Q98|1|4|G|180
6Q98|1|4|G|181
6Q98|1|4|U|182
6Q98|1|4|C|183
6Q98|1|4|A|184
6Q98|1|4|A|185
6Q98|1|4|A|186
6Q98|1|4|C|187
6Q98|1|4|C|188
6Q98|1|4|C|189
6Q98|1|4|A|190
6Q98|1|4|A|191
6Q98|1|4|A|192
6Q98|1|4|A|193
6Q98|1|4|G|194
6Q98|1|4|A|195
6Q98|1|4|G|196
6Q98|1|4|A|197
6Q98|1|4|U|198
6Q98|1|4|C|199
6Q98|1|4|G|200
6Q98|1|4|C|201
*
6Q98|1|4|G|228
6Q98|1|4|U|229
6Q98|1|4|U|230
6Q98|1|4|A|231
6Q98|1|4|A|232
6Q98|1|4|A|233
6Q98|1|4|A|234
6Q98|1|4|C|235
6Q98|1|4|U|236
6Q98|1|4|U|237
6Q98|1|4|A|238
6Q98|1|4|A|239
6Q98|1|4|U|240
6Q98|1|4|C|241
6Q98|1|4|A|242
6Q98|1|4|G|243
6Q98|1|4|G|244
6Q98|1|4|C|245
6Q98|1|4|U|246
6Q98|1|4|A|247
6Q98|1|4|G|248
6Q98|1|4|U|249
6Q98|1|4|U|250
6Q98|1|4|U|251
6Q98|1|4|G|252
6Q98|1|4|U|253
6Q98|1|4|U|254
6Q98|1|4|A|255
6Q98|1|4|G|256
6Q98|1|4|U|257
6Q98|1|4|G|258
6Q98|1|4|G|259
*
6Q98|1|4|C|272
6Q98|1|4|A|273
6Q98|1|4|G|274
6Q98|1|4|C|275
6Q98|1|4|U|276
6Q98|1|4|G|277
6Q98|1|4|G|278
6Q98|1|4|C|279
6Q98|1|4|A|280
6Q98|1|4|A|281
6Q98|1|4|G|282
6Q98|1|4|C|283
6Q98|1|4|G|284
6Q98|1|4|A|285
6Q98|1|4|A|286
6Q98|1|4|U|287
6Q98|1|4|G|288
6Q98|1|4|U|289
6Q98|1|4|A|290
6Q98|1|4|A|291
6Q98|1|4|A|292
6Q98|1|4|G|293
6Q98|1|4|A|294
6Q98|1|4|C|295
6Q98|1|4|U|296
6Q98|1|4|G|297
6Q98|1|4|A|298
6Q98|1|4|C|299
6Q98|1|4|U|300
6Q98|1|4|A|301
6Q98|1|4|A|302
6Q98|1|4|G|303
6Q98|1|4|C|304
6Q98|1|4|A|305
6Q98|1|4|U|306
6Q98|1|4|G|307
6Q98|1|4|U|308
6Q98|1|4|A|309
6Q98|1|4|G|310
6Q98|1|4|U|311
6Q98|1|4|A|312
6Q98|1|4|C|313
Current chains
- Chain 4
- transfer-messenger RNA (tmRNA)
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain 5
- SsrA-binding protein
- Chain h
- 30S ribosomal protein S3
- Chain i
- 30S ribosomal protein S4
- Chain j
- 30S ribosomal protein S5
- Chain o
- 30S ribosomal protein S10
- Chain q
- 30S ribosomal protein S12
- Chain x
- 30S ribosomal protein S19
Coloring options: