Loop J6_6Q98

3D structure

PDB id: 6Q98 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.3 Å

Loop

Sequence: AACUG*CACAG*UGACGCCU(2MG)*CG*CCUAAGGUAGC*GCACGAAUGGCGUAAU
Length: 48 nucleotides
Bulged bases: 6Q98|1|1|U|1971
QA status: Modified nucleotides: 2MG

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6Q98|1|1|A|1772
6Q98|1|1|A|1773
6Q98|1|1|C|1774
6Q98|1|1|U|1775
6Q98|1|1|G|1776
*
6Q98|1|1|C|1788
6Q98|1|1|A|1789
6Q98|1|1|C|1790
6Q98|1|1|A|1791
6Q98|1|1|G|1792
*
6Q98|1|1|U|1827
6Q98|1|1|G|1828
6Q98|1|1|A|1829
6Q98|1|1|C|1830
6Q98|1|1|G|1831
6Q98|1|1|C|1832
6Q98|1|1|C|1833
6Q98|1|1|U|1834
6Q98|1|1|2MG|1835
*
6Q98|1|1|C|1905
6Q98|1|1|G|1906
*
6Q98|1|1|C|1924
6Q98|1|1|C|1925
6Q98|1|1|U|1926
6Q98|1|1|A|1927
6Q98|1|1|A|1928
6Q98|1|1|G|1929
6Q98|1|1|G|1930
6Q98|1|1|U|1931
6Q98|1|1|A|1932
6Q98|1|1|G|1933
6Q98|1|1|C|1934
*
6Q98|1|1|G|1964
6Q98|1|1|C|1965
6Q98|1|1|A|1966
6Q98|1|1|C|1967
6Q98|1|1|G|1968
6Q98|1|1|A|1969
6Q98|1|1|A|1970
6Q98|1|1|U|1971
6Q98|1|1|G|1972
6Q98|1|1|G|1973
6Q98|1|1|C|1974
6Q98|1|1|G|1975
6Q98|1|1|U|1976
6Q98|1|1|A|1977
6Q98|1|1|A|1978
6Q98|1|1|U|1979

Current chains

Chain 1: 23S ribosomal RNA

Nearby chains

Chain 2: Small subunit ribosomal RNA; SSU rRNA
Chain 4: Transfer-messenger RNA; tmRNA
Chain 5: SsrA-binding protein
Chain B: 50S ribosomal protein L2

J6_6Q98_006