J6_6QDW_002
3D structure
- PDB id
- 6QDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.83 Å
Loop
- Sequence
- UUUA*UUUG*CU*AGCA*UCAUAGUGAUCC*GCUCAACGGAUAAAA
- Length
- 41 nucleotides
- Bulged bases
- 6QDW|1|b|U|2080, 6QDW|1|b|A|2392, 6QDW|1|b|U|2394, 6QDW|1|b|G|2432, 6QDW|1|b|A|2434, 6QDW|1|b|U|2435
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6QDW|1|b|U|2078
6QDW|1|b|U|2079
6QDW|1|b|U|2080
6QDW|1|b|A|2081
*
6QDW|1|b|U|2247
6QDW|1|b|U|2248
6QDW|1|b|U|2249
6QDW|1|b|G|2250
*
6QDW|1|b|C|2262
6QDW|1|b|U|2263
*
6QDW|1|b|A|2285
6QDW|1|b|G|2286
6QDW|1|b|C|2287
6QDW|1|b|A|2288
*
6QDW|1|b|U|2388
6QDW|1|b|C|2389
6QDW|1|b|A|2390
6QDW|1|b|U|2391
6QDW|1|b|A|2392
6QDW|1|b|G|2393
6QDW|1|b|U|2394
6QDW|1|b|G|2395
6QDW|1|b|A|2396
6QDW|1|b|U|2397
6QDW|1|b|C|2398
6QDW|1|b|C|2399
*
6QDW|1|b|G|2425
6QDW|1|b|C|2426
6QDW|1|b|U|2427
6QDW|1|b|C|2428
6QDW|1|b|A|2429
6QDW|1|b|A|2430
6QDW|1|b|C|2431
6QDW|1|b|G|2432
6QDW|1|b|G|2433
6QDW|1|b|A|2434
6QDW|1|b|U|2435
6QDW|1|b|A|2436
6QDW|1|b|A|2437
6QDW|1|b|A|2438
6QDW|1|b|A|2439
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain 0
- 50S ribosomal protein L28
- Chain 4
- 50S ribosomal protein L33
- Chain 7
- 50S ribosomal protein L35
- Chain c
- 50S ribosomal protein L2
- Chain l
- 50S ribosomal protein L15
- Chain y
- 50S ribosomal protein L27
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