J6_6QT0_001
3D structure
- PDB id
- 6QT0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC
- Length
- 42 nucleotides
- Bulged bases
- 6QT0|1|A|A|67, 6QT0|1|A|U|329
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6QT0|1|A|G|22
6QT0|1|A|A|23
6QT0|1|A|G|24
6QT0|1|A|U|25
6QT0|1|A|A|26
6QT0|1|A|C|27
*
6QT0|1|A|G|58
6QT0|1|A|G|59
6QT0|1|A|A|60
6QT0|1|A|A|61
6QT0|1|A|A|62
6QT0|1|A|A|63
6QT0|1|A|G|64
6QT0|1|A|A|65
6QT0|1|A|A|66
6QT0|1|A|A|67
6QT0|1|A|C|68
*
6QT0|1|A|G|75
6QT0|1|A|G|76
6QT0|1|A|A|77
6QT0|1|A|U|78
6QT0|1|A|U|79
*
6QT0|1|A|A|106
6QT0|1|A|A|107
6QT0|1|A|A|108
6QT0|1|A|A|109
6QT0|1|A|G|110
*
6QT0|1|A|C|321
6QT0|1|A|U|322
6QT0|1|A|A|323
6QT0|1|A|A|324
6QT0|1|A|A|325
6QT0|1|A|U|326
6QT0|1|A|A|327
6QT0|1|A|U|328
6QT0|1|A|U|329
6QT0|1|A|G|330
6QT0|1|A|G|331
*
6QT0|1|y|C|32
6QT0|1|y|A|33
6QT0|1|y|U|34
6QT0|1|y|C|35
Current chains
- Chain A
- 25S rRNA
- Chain y
- 5.8S rRNA
Nearby chains
- Chain D
- 60S ribosomal protein L4-A
- Chain K
- 60S ribosomal protein L13-A
- Chain O
- 60S ribosomal protein L15-A
- Chain Z
- 60S ribosomal protein L35-A
- Chain h
- 60S ribosomal protein L36-A
- Chain i
- 60S ribosomal protein L37-A
Coloring options: