Loop J6_6S05

3D structure

PDB id: 6S05 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å

Loop

Sequence: GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGGC*GCAUC
Length: 44 nucleotides
Bulged bases: 6S05|1|A|A|67, 6S05|1|A|U|329
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6S05|1|A|G|22
6S05|1|A|A|23
6S05|1|A|G|24
6S05|1|A|U|25
6S05|1|A|A|26
6S05|1|A|C|27
*
6S05|1|A|G|58
6S05|1|A|G|59
6S05|1|A|A|60
6S05|1|A|A|61
6S05|1|A|A|62
6S05|1|A|A|63
6S05|1|A|G|64
6S05|1|A|A|65
6S05|1|A|A|66
6S05|1|A|A|67
6S05|1|A|C|68
*
6S05|1|A|G|75
6S05|1|A|G|76
6S05|1|A|A|77
6S05|1|A|U|78
6S05|1|A|U|79
*
6S05|1|A|A|106
6S05|1|A|A|107
6S05|1|A|A|108
6S05|1|A|A|109
6S05|1|A|G|110
*
6S05|1|A|C|321
6S05|1|A|U|322
6S05|1|A|A|323
6S05|1|A|A|324
6S05|1|A|A|325
6S05|1|A|U|326
6S05|1|A|A|327
6S05|1|A|U|328
6S05|1|A|U|329
6S05|1|A|G|330
6S05|1|A|G|331
6S05|1|A|C|332
*
6S05|1|y|G|31
6S05|1|y|C|32
6S05|1|y|A|33
6S05|1|y|U|34
6S05|1|y|C|35

Current chains

Chain A: 25S ribosomal RNA
Chain y: 5.8S ribosomal RNA

Nearby chains

Chain D: 60S ribosomal protein L4-A
Chain K: 60S ribosomal protein L13-A
Chain O: 60S ribosomal protein L15-A
Chain Z: 60S ribosomal protein L35-A
Chain h: 60S ribosomal protein L36-A
Chain i: 60S ribosomal protein L37-A

J6_6S05_001