J6_6S0X_001

3D structure

PDB id

6S0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

GAAGCC*GGCACAC*GGAAGAGAAAG*CGAUU*AAGAG*CUAAAUACUCUC

Length

46 nucleotides

Bulged bases

6S0X|1|A|C|46, 6S0X|1|A|C|182, 6S0X|1|A|C|184, 6S0X|1|A|A|226, 6S0X|1|A|G|267

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6S0X|1|A|G|42
6S0X|1|A|A|43
6S0X|1|A|A|44
6S0X|1|A|G|45
6S0X|1|A|C|46
6S0X|1|A|C|47
*
6S0X|1|A|G|180
6S0X|1|A|G|181
6S0X|1|A|C|182
6S0X|1|A|A|183
6S0X|1|A|C|184
6S0X|1|A|A|185
6S0X|1|A|C|186
*
6S0X|1|A|G|217
6S0X|1|A|G|218
6S0X|1|A|A|219
6S0X|1|A|A|220
6S0X|1|A|G|221
6S0X|1|A|A|222
6S0X|1|A|G|223
6S0X|1|A|A|224
6S0X|1|A|A|225
6S0X|1|A|A|226
6S0X|1|A|G|227
*
6S0X|1|A|C|234
6S0X|1|A|G|235
6S0X|1|A|A|236
6S0X|1|A|U|237
6S0X|1|A|U|238
*
6S0X|1|A|A|265
6S0X|1|A|A|266
6S0X|1|A|G|267
6S0X|1|A|A|268
6S0X|1|A|G|269
*
6S0X|1|A|C|472
6S0X|1|A|U|473
6S0X|1|A|A|474
6S0X|1|A|A|475
6S0X|1|A|A|476
6S0X|1|A|U|477
6S0X|1|A|A|478
6S0X|1|A|C|479
6S0X|1|A|U|480
6S0X|1|A|C|481
6S0X|1|A|U|482
6S0X|1|A|C|483

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34