J6_6SGC_001
3D structure
- PDB id
- 6SGC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled on a poly(A) tail
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GGCGAC*GGAAAAGAAAC*GGAUU*AAGAG*CUAAAUAC*GUC
- Length
- 38 nucleotides
- Bulged bases
- 6SGC|1|54|A|66, 6SGC|1|84|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6SGC|1|54|G|21
6SGC|1|54|G|22
6SGC|1|54|C|23
6SGC|1|54|G|24
6SGC|1|54|A|25
6SGC|1|54|C|26
*
6SGC|1|54|G|57
6SGC|1|54|G|58
6SGC|1|54|A|59
6SGC|1|54|A|60
6SGC|1|54|A|61
6SGC|1|54|A|62
6SGC|1|54|G|63
6SGC|1|54|A|64
6SGC|1|54|A|65
6SGC|1|54|A|66
6SGC|1|54|C|67
*
6SGC|1|54|G|74
6SGC|1|54|G|75
6SGC|1|54|A|76
6SGC|1|54|U|77
6SGC|1|54|U|78
*
6SGC|1|54|A|105
6SGC|1|54|A|106
6SGC|1|54|G|107
6SGC|1|54|A|108
6SGC|1|54|G|109
*
6SGC|1|54|C|332
6SGC|1|54|U|333
6SGC|1|54|A|334
6SGC|1|54|A|335
6SGC|1|54|A|336
6SGC|1|54|U|337
6SGC|1|54|A|338
6SGC|1|54|C|339
*
6SGC|1|84|G|33
6SGC|1|84|U|34
6SGC|1|84|C|35
Current chains
- Chain 54
- 28S ribosomal RNA
- Chain 84
- 5.8S ribosomal RNA
Nearby chains
- Chain L2
- eL13
- Chain N2
- Ribosomal protein L15
- Chain h2
- uL29
- Chain i2
- 60S ribosomal protein L36
- Chain j2
- Ribosomal protein L37
Coloring options: