J6_6SKF_001

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

GC*GGAAC*GGAAAAG(A2M)AA(OMG)*CGAUG*CACAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

6SKF|1|BA|A|214

QA status

Modified nucleotides: A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SKF|1|BA|G|54
6SKF|1|BA|C|55
*
6SKF|1|BA|G|170
6SKF|1|BA|G|171
6SKF|1|BA|A|172
6SKF|1|BA|A|173
6SKF|1|BA|C|174
*
6SKF|1|BA|G|205
6SKF|1|BA|G|206
6SKF|1|BA|A|207
6SKF|1|BA|A|208
6SKF|1|BA|A|209
6SKF|1|BA|A|210
6SKF|1|BA|G|211
6SKF|1|BA|A2M|212
6SKF|1|BA|A|213
6SKF|1|BA|A|214
6SKF|1|BA|OMG|215
*
6SKF|1|BA|C|222
6SKF|1|BA|G|223
6SKF|1|BA|A|224
6SKF|1|BA|U|225
6SKF|1|BA|G|226
*
6SKF|1|BA|C|253
6SKF|1|BA|A|254
6SKF|1|BA|C|255
6SKF|1|BA|A|256
6SKF|1|BA|G|257
*
6SKF|1|BA|C|466
6SKF|1|BA|U|467
6SKF|1|BA|A|468
6SKF|1|BA|A|469
6SKF|1|BA|A|470
6SKF|1|BA|U|471
6SKF|1|BA|A|472
6SKF|1|BA|C|473

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BP

50S ribosomal protein L15e

Chain Bh

50S ribosomal protein L37e