J6_6SPF_001

3D structure

PDB id

6SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AUUAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

6SPF|1|A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SPF|1|A|G|45
6SPF|1|A|G|46
*
6SPF|1|A|C|179
6SPF|1|A|G|180
6SPF|1|A|A|181
6SPF|1|A|A|182
6SPF|1|A|C|183
*
6SPF|1|A|G|214
6SPF|1|A|G|215
6SPF|1|A|A|216
6SPF|1|A|A|217
6SPF|1|A|A|218
6SPF|1|A|A|219
6SPF|1|A|G|220
6SPF|1|A|A|221
6SPF|1|A|A|222
6SPF|1|A|A|223
6SPF|1|A|U|224
*
6SPF|1|A|A|231
6SPF|1|A|G|232
6SPF|1|A|A|233
6SPF|1|A|U|234
6SPF|1|A|U|235
*
6SPF|1|A|A|262
6SPF|1|A|U|263
6SPF|1|A|U|264
6SPF|1|A|A|265
6SPF|1|A|G|266
*
6SPF|1|A|C|417
6SPF|1|A|U|418
6SPF|1|A|A|419
6SPF|1|A|A|420
6SPF|1|A|A|421
6SPF|1|A|U|422
6SPF|1|A|A|423
6SPF|1|A|C|424

Current chains

Chain A

Pseudomonas aeruginosa strain PAO1 23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L34