J6_6SPG_001

3D structure

PDB id

6SPG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AUUAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

6SPG|1|A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SPG|1|A|G|45
6SPG|1|A|G|46
*
6SPG|1|A|C|179
6SPG|1|A|G|180
6SPG|1|A|A|181
6SPG|1|A|A|182
6SPG|1|A|C|183
*
6SPG|1|A|G|214
6SPG|1|A|G|215
6SPG|1|A|A|216
6SPG|1|A|A|217
6SPG|1|A|A|218
6SPG|1|A|A|219
6SPG|1|A|G|220
6SPG|1|A|A|221
6SPG|1|A|A|222
6SPG|1|A|A|223
6SPG|1|A|U|224
*
6SPG|1|A|A|231
6SPG|1|A|G|232
6SPG|1|A|A|233
6SPG|1|A|U|234
6SPG|1|A|U|235
*
6SPG|1|A|A|262
6SPG|1|A|U|263
6SPG|1|A|U|264
6SPG|1|A|A|265
6SPG|1|A|G|266
*
6SPG|1|A|C|417
6SPG|1|A|U|418
6SPG|1|A|A|419
6SPG|1|A|A|420
6SPG|1|A|A|421
6SPG|1|A|U|422
6SPG|1|A|A|423
6SPG|1|A|C|424

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L34