Loop J6_6SV4

3D structure

PDB id: 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
Description: The cryo-EM structure of SDD1-stalled collided trisome.
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å

Loop

Sequence: GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC
Length: 42 nucleotides
Bulged bases: 6SV4|1|YQ|A|67, 6SV4|1|YQ|U|329, 6SV4|1|YS|U|34
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6SV4|1|YQ|G|22
6SV4|1|YQ|A|23
6SV4|1|YQ|G|24
6SV4|1|YQ|U|25
6SV4|1|YQ|A|26
6SV4|1|YQ|C|27
*
6SV4|1|YQ|G|58
6SV4|1|YQ|G|59
6SV4|1|YQ|A|60
6SV4|1|YQ|A|61
6SV4|1|YQ|A|62
6SV4|1|YQ|A|63
6SV4|1|YQ|G|64
6SV4|1|YQ|A|65
6SV4|1|YQ|A|66
6SV4|1|YQ|A|67
6SV4|1|YQ|C|68
*
6SV4|1|YQ|G|75
6SV4|1|YQ|G|76
6SV4|1|YQ|A|77
6SV4|1|YQ|U|78
6SV4|1|YQ|U|79
*
6SV4|1|YQ|A|106
6SV4|1|YQ|A|107
6SV4|1|YQ|A|108
6SV4|1|YQ|A|109
6SV4|1|YQ|G|110
*
6SV4|1|YQ|C|321
6SV4|1|YQ|U|322
6SV4|1|YQ|A|323
6SV4|1|YQ|A|324
6SV4|1|YQ|A|325
6SV4|1|YQ|U|326
6SV4|1|YQ|A|327
6SV4|1|YQ|U|328
6SV4|1|YQ|U|329
6SV4|1|YQ|G|330
6SV4|1|YQ|G|331
*
6SV4|1|YS|C|32
6SV4|1|YS|A|33
6SV4|1|YS|U|34
6SV4|1|YS|C|35

Current chains

Chain YQ: 25S rRNA
Chain YS: 5.8S rRNA

Nearby chains

Chain XC: 60S ribosomal protein L36-A
Chain XF: 60S ribosomal protein L37-A
Chain XJ: 60S ribosomal protein L13-A
Chain XQ: 60S ribosomal protein L15-A
Chain YE: 60S ribosomal protein L4-A
Chain YP: 60S ribosomal protein L35-A

J6_6SV4_003