3D structure

PDB id
6T59 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.11 Å

Loop

Sequence
GGCGAC*GGAAAAGAAAC*GGAUU*AAGAG*CUAAAUAC*GUC
Length
38 nucleotides
Bulged bases
6T59|1|54|A|66, 6T59|1|84|U|34
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6T59|1|54|G|21
6T59|1|54|G|22
6T59|1|54|C|23
6T59|1|54|G|24
6T59|1|54|A|25
6T59|1|54|C|26
*
6T59|1|54|G|57
6T59|1|54|G|58
6T59|1|54|A|59
6T59|1|54|A|60
6T59|1|54|A|61
6T59|1|54|A|62
6T59|1|54|G|63
6T59|1|54|A|64
6T59|1|54|A|65
6T59|1|54|A|66
6T59|1|54|C|67
*
6T59|1|54|G|74
6T59|1|54|G|75
6T59|1|54|A|76
6T59|1|54|U|77
6T59|1|54|U|78
*
6T59|1|54|A|105
6T59|1|54|A|106
6T59|1|54|G|107
6T59|1|54|A|108
6T59|1|54|G|109
*
6T59|1|54|C|332
6T59|1|54|U|333
6T59|1|54|A|334
6T59|1|54|A|335
6T59|1|54|A|336
6T59|1|54|U|337
6T59|1|54|A|338
6T59|1|54|C|339
*
6T59|1|84|G|33
6T59|1|84|U|34
6T59|1|84|C|35

Current chains

Chain 54
28S ribosomal RNA
Chain 84
5.8S ribosomal RNA

Nearby chains

Chain L3
eL13
Chain N3
Ribosomal protein L15
Chain h3
uL29
Chain i3
60S ribosomal protein L36
Chain j3
Ribosomal protein L37

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.2347 s