J6_6TC3_001

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

6TC3|1|23S1|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6TC3|1|23S1|G|45
6TC3|1|23S1|G|46
*
6TC3|1|23S1|C|179
6TC3|1|23S1|G|180
6TC3|1|23S1|A|181
6TC3|1|23S1|A|182
6TC3|1|23S1|C|183
*
6TC3|1|23S1|G|214
6TC3|1|23S1|G|215
6TC3|1|23S1|A|216
6TC3|1|23S1|A|217
6TC3|1|23S1|A|218
6TC3|1|23S1|A|219
6TC3|1|23S1|G|220
6TC3|1|23S1|A|221
6TC3|1|23S1|A|222
6TC3|1|23S1|A|223
6TC3|1|23S1|U|224
*
6TC3|1|23S1|A|231
6TC3|1|23S1|G|232
6TC3|1|23S1|A|233
6TC3|1|23S1|U|234
6TC3|1|23S1|U|235
*
6TC3|1|23S1|A|262
6TC3|1|23S1|G|263
6TC3|1|23S1|C|264
6TC3|1|23S1|A|265
6TC3|1|23S1|G|266
*
6TC3|1|23S1|C|426
6TC3|1|23S1|U|427
6TC3|1|23S1|A|428
6TC3|1|23S1|A|429
6TC3|1|23S1|A|430
6TC3|1|23S1|U|431
6TC3|1|23S1|A|432
6TC3|1|23S1|C|433

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain L341

50S ribosomal protein L34