J6_6U48_001

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

6U48|1|CA|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6U48|1|CA|G|45
6U48|1|CA|G|46
*
6U48|1|CA|C|179
6U48|1|CA|G|180
6U48|1|CA|A|181
6U48|1|CA|A|182
6U48|1|CA|C|183
*
6U48|1|CA|G|214
6U48|1|CA|G|215
6U48|1|CA|A|216
6U48|1|CA|A|217
6U48|1|CA|A|218
6U48|1|CA|A|219
6U48|1|CA|G|220
6U48|1|CA|A|221
6U48|1|CA|A|222
6U48|1|CA|A|223
6U48|1|CA|U|224
*
6U48|1|CA|A|231
6U48|1|CA|G|232
6U48|1|CA|A|233
6U48|1|CA|U|234
6U48|1|CA|U|235
*
6U48|1|CA|A|262
6U48|1|CA|G|263
6U48|1|CA|C|264
6U48|1|CA|A|265
6U48|1|CA|G|266
*
6U48|1|CA|C|426
6U48|1|CA|U|427
6U48|1|CA|A|428
6U48|1|CA|A|429
6U48|1|CA|A|430
6U48|1|CA|U|431
6U48|1|CA|A|432
6U48|1|CA|C|433

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C3

50S ribosomal protein bL34