J6_6V3D_001

3D structure

PDB id

6V3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AUCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

6V3D|1|AN1|A|230

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6V3D|1|AN1|G|52
6V3D|1|AN1|G|53
*
6V3D|1|AN1|C|186
6V3D|1|AN1|G|187
6V3D|1|AN1|A|188
6V3D|1|AN1|A|189
6V3D|1|AN1|C|190
*
6V3D|1|AN1|G|221
6V3D|1|AN1|G|222
6V3D|1|AN1|A|223
6V3D|1|AN1|A|224
6V3D|1|AN1|A|225
6V3D|1|AN1|A|226
6V3D|1|AN1|G|227
6V3D|1|AN1|A|228
6V3D|1|AN1|A|229
6V3D|1|AN1|A|230
6V3D|1|AN1|U|231
*
6V3D|1|AN1|A|238
6V3D|1|AN1|G|239
6V3D|1|AN1|A|240
6V3D|1|AN1|U|241
6V3D|1|AN1|U|242
*
6V3D|1|AN1|A|269
6V3D|1|AN1|U|270
6V3D|1|AN1|C|271
6V3D|1|AN1|A|272
6V3D|1|AN1|G|273
*
6V3D|1|AN1|C|425
6V3D|1|AN1|U|426
6V3D|1|AN1|A|427
6V3D|1|AN1|A|428
6V3D|1|AN1|A|429
6V3D|1|AN1|U|430
6V3D|1|AN1|A|431
6V3D|1|AN1|C|432

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L34