J6_6VWN_001

3D structure

PDB id

6VWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

6VWN|1|2|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VWN|1|2|G|45
6VWN|1|2|G|46
*
6VWN|1|2|C|179
6VWN|1|2|G|180
6VWN|1|2|A|181
6VWN|1|2|A|182
6VWN|1|2|C|183
*
6VWN|1|2|G|214
6VWN|1|2|G|215
6VWN|1|2|A|216
6VWN|1|2|A|217
6VWN|1|2|A|218
6VWN|1|2|A|219
6VWN|1|2|G|220
6VWN|1|2|A|221
6VWN|1|2|A|222
6VWN|1|2|A|223
6VWN|1|2|U|224
*
6VWN|1|2|A|231
6VWN|1|2|G|232
6VWN|1|2|A|233
6VWN|1|2|U|234
6VWN|1|2|U|235
*
6VWN|1|2|A|262
6VWN|1|2|G|263
6VWN|1|2|C|264
6VWN|1|2|A|265
6VWN|1|2|G|266
*
6VWN|1|2|C|426
6VWN|1|2|U|427
6VWN|1|2|A|428
6VWN|1|2|A|429
6VWN|1|2|A|430
6VWN|1|2|U|431
6VWN|1|2|A|432
6VWN|1|2|C|433

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain AA

50S ribosomal protein L34