J6_6VWN_002
3D structure
- PDB id
- 6VWN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UUUA*UUUG*CU*AGCA*UCAUAGUGAUCC*GCUCAACGGAUAAAA
- Length
- 41 nucleotides
- Bulged bases
- 6VWN|1|2|U|2076, 6VWN|1|2|A|2388, 6VWN|1|2|U|2390, 6VWN|1|2|G|2428, 6VWN|1|2|A|2430, 6VWN|1|2|A|2432
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6VWN|1|2|U|2074
6VWN|1|2|U|2075
6VWN|1|2|U|2076
6VWN|1|2|A|2077
*
6VWN|1|2|U|2243
6VWN|1|2|U|2244
6VWN|1|2|U|2245
6VWN|1|2|G|2246
*
6VWN|1|2|C|2258
6VWN|1|2|U|2259
*
6VWN|1|2|A|2281
6VWN|1|2|G|2282
6VWN|1|2|C|2283
6VWN|1|2|A|2284
*
6VWN|1|2|U|2384
6VWN|1|2|C|2385
6VWN|1|2|A|2386
6VWN|1|2|U|2387
6VWN|1|2|A|2388
6VWN|1|2|G|2389
6VWN|1|2|U|2390
6VWN|1|2|G|2391
6VWN|1|2|A|2392
6VWN|1|2|U|2393
6VWN|1|2|C|2394
6VWN|1|2|C|2395
*
6VWN|1|2|G|2421
6VWN|1|2|C|2422
6VWN|1|2|U|2423
6VWN|1|2|C|2424
6VWN|1|2|A|2425
6VWN|1|2|A|2426
6VWN|1|2|C|2427
6VWN|1|2|G|2428
6VWN|1|2|G|2429
6VWN|1|2|A|2430
6VWN|1|2|U|2431
6VWN|1|2|A|2432
6VWN|1|2|A|2433
6VWN|1|2|A|2434
6VWN|1|2|A|2435
Current chains
- Chain 2
- 23S ribosomal RNA
Nearby chains
- Chain 5
- Transfer RNA; tRNA
- Chain A
- 50S ribosomal protein L2
- Chain AB
- 50S ribosomal protein L35
- Chain J
- 50S ribosomal protein L15
- Chain U
- 50S ribosomal protein L27
- Chain V
- 50S ribosomal protein L28
- Chain Z
- 50S ribosomal protein L33
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