J6_6VYT_001

3D structure

PDB id

6VYT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A2 (TTC-A2) containing a 15 nt long mRNA spacer, NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

14 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

6VYT|1|a|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VYT|1|a|G|45
6VYT|1|a|G|46
*
6VYT|1|a|C|179
6VYT|1|a|G|180
6VYT|1|a|A|181
6VYT|1|a|A|182
6VYT|1|a|C|183
*
6VYT|1|a|G|214
6VYT|1|a|G|215
6VYT|1|a|A|216
6VYT|1|a|A|217
6VYT|1|a|A|218
6VYT|1|a|A|219
6VYT|1|a|G|220
6VYT|1|a|A|221
6VYT|1|a|A|222
6VYT|1|a|A|223
6VYT|1|a|U|224
*
6VYT|1|a|A|231
6VYT|1|a|G|232
6VYT|1|a|A|233
6VYT|1|a|U|234
6VYT|1|a|U|235
*
6VYT|1|a|A|262
6VYT|1|a|G|263
6VYT|1|a|C|264
6VYT|1|a|A|265
6VYT|1|a|G|266
*
6VYT|1|a|C|426
6VYT|1|a|U|427
6VYT|1|a|A|428
6VYT|1|a|A|429
6VYT|1|a|A|430
6VYT|1|a|U|431
6VYT|1|a|A|432
6VYT|1|a|C|433

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L34