J6_6VYU_001

3D structure

PDB id

6VYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C2 (TTC-C2) containing a 27 nt long mRNA spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

6VYU|1|a|A|223

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VYU|1|a|G|45
6VYU|1|a|G|46
*
6VYU|1|a|C|179
6VYU|1|a|G|180
6VYU|1|a|A|181
6VYU|1|a|A|182
6VYU|1|a|C|183
*
6VYU|1|a|G|214
6VYU|1|a|G|215
6VYU|1|a|A|216
6VYU|1|a|A|217
6VYU|1|a|A|218
6VYU|1|a|A|219
6VYU|1|a|G|220
6VYU|1|a|A|221
6VYU|1|a|A|222
6VYU|1|a|A|223
6VYU|1|a|U|224
*
6VYU|1|a|A|231
6VYU|1|a|G|232
6VYU|1|a|A|233
6VYU|1|a|U|234
6VYU|1|a|U|235
*
6VYU|1|a|A|262
6VYU|1|a|G|263
6VYU|1|a|C|264
6VYU|1|a|A|265
6VYU|1|a|G|266
*
6VYU|1|a|C|426
6VYU|1|a|U|427
6VYU|1|a|A|428
6VYU|1|a|A|429
6VYU|1|a|A|430
6VYU|1|a|U|431
6VYU|1|a|A|432
6VYU|1|a|C|433

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L34