J6_6VYW_001

3D structure

PDB id

6VYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C3 (TTC-C3) containing mRNA with a 27 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

6VYW|1|a|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VYW|1|a|G|45
6VYW|1|a|G|46
*
6VYW|1|a|C|179
6VYW|1|a|G|180
6VYW|1|a|A|181
6VYW|1|a|A|182
6VYW|1|a|C|183
*
6VYW|1|a|G|214
6VYW|1|a|G|215
6VYW|1|a|A|216
6VYW|1|a|A|217
6VYW|1|a|A|218
6VYW|1|a|A|219
6VYW|1|a|G|220
6VYW|1|a|A|221
6VYW|1|a|A|222
6VYW|1|a|A|223
6VYW|1|a|U|224
*
6VYW|1|a|A|231
6VYW|1|a|G|232
6VYW|1|a|A|233
6VYW|1|a|U|234
6VYW|1|a|U|235
*
6VYW|1|a|A|262
6VYW|1|a|G|263
6VYW|1|a|C|264
6VYW|1|a|A|265
6VYW|1|a|G|266
*
6VYW|1|a|C|426
6VYW|1|a|U|427
6VYW|1|a|A|428
6VYW|1|a|A|429
6VYW|1|a|A|430
6VYW|1|a|U|431
6VYW|1|a|A|432
6VYW|1|a|C|433

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L34