J6_6VYX_001

3D structure

PDB id

6VYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C4 (TTC-C4) containing mRNA with a 21 nt long spacer, transcription factor NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

6VYX|1|a|A|223

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VYX|1|a|G|45
6VYX|1|a|G|46
*
6VYX|1|a|C|179
6VYX|1|a|G|180
6VYX|1|a|A|181
6VYX|1|a|A|182
6VYX|1|a|C|183
*
6VYX|1|a|G|214
6VYX|1|a|G|215
6VYX|1|a|A|216
6VYX|1|a|A|217
6VYX|1|a|A|218
6VYX|1|a|A|219
6VYX|1|a|G|220
6VYX|1|a|A|221
6VYX|1|a|A|222
6VYX|1|a|A|223
6VYX|1|a|U|224
*
6VYX|1|a|A|231
6VYX|1|a|G|232
6VYX|1|a|A|233
6VYX|1|a|U|234
6VYX|1|a|U|235
*
6VYX|1|a|A|262
6VYX|1|a|G|263
6VYX|1|a|C|264
6VYX|1|a|A|265
6VYX|1|a|G|266
*
6VYX|1|a|C|426
6VYX|1|a|U|427
6VYX|1|a|A|428
6VYX|1|a|A|429
6VYX|1|a|A|430
6VYX|1|a|U|431
6VYX|1|a|A|432
6VYX|1|a|C|433

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L34