J6_6VYY_001

3D structure

PDB id

6VYY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C5 (TTC-C5) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

6VYY|1|a|A|223

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VYY|1|a|G|45
6VYY|1|a|G|46
*
6VYY|1|a|C|179
6VYY|1|a|G|180
6VYY|1|a|A|181
6VYY|1|a|A|182
6VYY|1|a|C|183
*
6VYY|1|a|G|214
6VYY|1|a|G|215
6VYY|1|a|A|216
6VYY|1|a|A|217
6VYY|1|a|A|218
6VYY|1|a|A|219
6VYY|1|a|G|220
6VYY|1|a|A|221
6VYY|1|a|A|222
6VYY|1|a|A|223
6VYY|1|a|U|224
*
6VYY|1|a|A|231
6VYY|1|a|G|232
6VYY|1|a|A|233
6VYY|1|a|U|234
6VYY|1|a|U|235
*
6VYY|1|a|A|262
6VYY|1|a|G|263
6VYY|1|a|C|264
6VYY|1|a|A|265
6VYY|1|a|G|266
*
6VYY|1|a|C|426
6VYY|1|a|U|427
6VYY|1|a|A|428
6VYY|1|a|A|429
6VYY|1|a|A|430
6VYY|1|a|U|431
6VYY|1|a|A|432
6VYY|1|a|C|433

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L34