J6_6VYZ_001

3D structure

PDB id

6VYZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C6 (TTC-C6) containing mRNA with a 21 nt long spacer, NusA, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

6VYZ|1|a|A|223

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VYZ|1|a|G|45
6VYZ|1|a|G|46
*
6VYZ|1|a|C|179
6VYZ|1|a|G|180
6VYZ|1|a|A|181
6VYZ|1|a|A|182
6VYZ|1|a|C|183
*
6VYZ|1|a|G|214
6VYZ|1|a|G|215
6VYZ|1|a|A|216
6VYZ|1|a|A|217
6VYZ|1|a|A|218
6VYZ|1|a|A|219
6VYZ|1|a|G|220
6VYZ|1|a|A|221
6VYZ|1|a|A|222
6VYZ|1|a|A|223
6VYZ|1|a|U|224
*
6VYZ|1|a|A|231
6VYZ|1|a|G|232
6VYZ|1|a|A|233
6VYZ|1|a|U|234
6VYZ|1|a|U|235
*
6VYZ|1|a|A|262
6VYZ|1|a|G|263
6VYZ|1|a|C|264
6VYZ|1|a|A|265
6VYZ|1|a|G|266
*
6VYZ|1|a|C|426
6VYZ|1|a|U|427
6VYZ|1|a|A|428
6VYZ|1|a|A|429
6VYZ|1|a|A|430
6VYZ|1|a|U|431
6VYZ|1|a|A|432
6VYZ|1|a|C|433

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L34