J6_6VZ3_001

3D structure

PDB id

6VZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex D2 (TTC-D2) containing mRNA with a 27 nt long spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

6VZ3|1|a|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VZ3|1|a|G|45
6VZ3|1|a|G|46
*
6VZ3|1|a|C|179
6VZ3|1|a|G|180
6VZ3|1|a|A|181
6VZ3|1|a|A|182
6VZ3|1|a|C|183
*
6VZ3|1|a|G|214
6VZ3|1|a|G|215
6VZ3|1|a|A|216
6VZ3|1|a|A|217
6VZ3|1|a|A|218
6VZ3|1|a|A|219
6VZ3|1|a|G|220
6VZ3|1|a|A|221
6VZ3|1|a|A|222
6VZ3|1|a|A|223
6VZ3|1|a|U|224
*
6VZ3|1|a|A|231
6VZ3|1|a|G|232
6VZ3|1|a|A|233
6VZ3|1|a|U|234
6VZ3|1|a|U|235
*
6VZ3|1|a|A|262
6VZ3|1|a|G|263
6VZ3|1|a|C|264
6VZ3|1|a|A|265
6VZ3|1|a|G|266
*
6VZ3|1|a|C|426
6VZ3|1|a|U|427
6VZ3|1|a|A|428
6VZ3|1|a|A|429
6VZ3|1|a|A|430
6VZ3|1|a|U|431
6VZ3|1|a|A|432
6VZ3|1|a|C|433

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L34