J6_6VZ5_001

3D structure

PDB id

6VZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex D3 (TTC-D3) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

6VZ5|1|a|A|223

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VZ5|1|a|G|45
6VZ5|1|a|G|46
*
6VZ5|1|a|C|179
6VZ5|1|a|G|180
6VZ5|1|a|A|181
6VZ5|1|a|A|182
6VZ5|1|a|C|183
*
6VZ5|1|a|G|214
6VZ5|1|a|G|215
6VZ5|1|a|A|216
6VZ5|1|a|A|217
6VZ5|1|a|A|218
6VZ5|1|a|A|219
6VZ5|1|a|G|220
6VZ5|1|a|A|221
6VZ5|1|a|A|222
6VZ5|1|a|A|223
6VZ5|1|a|U|224
*
6VZ5|1|a|A|231
6VZ5|1|a|G|232
6VZ5|1|a|A|233
6VZ5|1|a|U|234
6VZ5|1|a|U|235
*
6VZ5|1|a|A|262
6VZ5|1|a|G|263
6VZ5|1|a|C|264
6VZ5|1|a|A|265
6VZ5|1|a|G|266
*
6VZ5|1|a|C|426
6VZ5|1|a|U|427
6VZ5|1|a|A|428
6VZ5|1|a|A|429
6VZ5|1|a|A|430
6VZ5|1|a|U|431
6VZ5|1|a|A|432
6VZ5|1|a|C|433

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L34