J6_6VZ7_001

3D structure

PDB id

6VZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C1 (TTC-C1) containing a 27 nt long mRNA spacer, NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

6VZ7|1|a|A|223

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VZ7|1|a|G|45
6VZ7|1|a|G|46
*
6VZ7|1|a|C|179
6VZ7|1|a|G|180
6VZ7|1|a|A|181
6VZ7|1|a|A|182
6VZ7|1|a|C|183
*
6VZ7|1|a|G|214
6VZ7|1|a|G|215
6VZ7|1|a|A|216
6VZ7|1|a|A|217
6VZ7|1|a|A|218
6VZ7|1|a|A|219
6VZ7|1|a|G|220
6VZ7|1|a|A|221
6VZ7|1|a|A|222
6VZ7|1|a|A|223
6VZ7|1|a|U|224
*
6VZ7|1|a|A|231
6VZ7|1|a|G|232
6VZ7|1|a|A|233
6VZ7|1|a|U|234
6VZ7|1|a|U|235
*
6VZ7|1|a|A|262
6VZ7|1|a|G|263
6VZ7|1|a|C|264
6VZ7|1|a|A|265
6VZ7|1|a|G|266
*
6VZ7|1|a|C|426
6VZ7|1|a|U|427
6VZ7|1|a|A|428
6VZ7|1|a|A|429
6VZ7|1|a|A|430
6VZ7|1|a|U|431
6VZ7|1|a|A|432
6VZ7|1|a|C|433

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L34