J6_6W6L_003

3D structure

PDB id

6W6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ribosome-TMCO1 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.84 Å

Loop

Sequence

UUGA*UUUG*CA*UGUC*GCCUCACGAUCC*GGUGUCAGAAAA

Length

38 nucleotides

Bulged bases

6W6L|1|t|G|3893, 6W6L|1|t|A|4338, 6W6L|1|t|A|4340, 6W6L|1|t|A|4341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6W6L|1|t|U|3891
6W6L|1|t|U|3892
6W6L|1|t|G|3893
6W6L|1|t|A|3894
*
6W6L|1|t|U|4150
6W6L|1|t|U|4151
6W6L|1|t|U|4152
6W6L|1|t|G|4153
*
6W6L|1|t|C|4166
6W6L|1|t|A|4167
*
6W6L|1|t|U|4189
6W6L|1|t|G|4190
6W6L|1|t|U|4191
6W6L|1|t|C|4192
*
6W6L|1|t|G|4293
6W6L|1|t|C|4294
6W6L|1|t|C|4295
6W6L|1|t|U|4296
6W6L|1|t|C|4297
6W6L|1|t|A|4298
6W6L|1|t|C|4299
6W6L|1|t|G|4300
6W6L|1|t|A|4301
6W6L|1|t|U|4302
6W6L|1|t|C|4303
6W6L|1|t|C|4304
*
6W6L|1|t|G|4332
6W6L|1|t|G|4333
6W6L|1|t|U|4334
6W6L|1|t|G|4335
6W6L|1|t|U|4336
6W6L|1|t|C|4337
6W6L|1|t|A|4338
6W6L|1|t|G|4339
6W6L|1|t|A|4340
6W6L|1|t|A|4341
6W6L|1|t|A|4342
6W6L|1|t|A|4343

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain A

60S ribosomal protein L8

Chain O

60S ribosomal protein L15

Chain R

60S ribosomal protein L18

Chain U

60S ribosomal protein L21

Chain b

60S ribosomal protein L27a

Chain p

60S ribosomal protein L36a

Chain v

Transfer RNA; tRNA