J6_6WDC_002

3D structure

PDB id

6WDC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure IV-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UUUA*UUUG*CU*AGCA*UCAUAGUGAUCC*GCUCAACGGAUAAAA

Length

41 nucleotides

Bulged bases

6WDC|1|1|U|2076, 6WDC|1|1|G|2428, 6WDC|1|1|A|2430, 6WDC|1|1|U|2431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6WDC|1|1|U|2074
6WDC|1|1|U|2075
6WDC|1|1|U|2076
6WDC|1|1|A|2077
*
6WDC|1|1|U|2243
6WDC|1|1|U|2244
6WDC|1|1|U|2245
6WDC|1|1|G|2246
*
6WDC|1|1|C|2258
6WDC|1|1|U|2259
*
6WDC|1|1|A|2281
6WDC|1|1|G|2282
6WDC|1|1|C|2283
6WDC|1|1|A|2284
*
6WDC|1|1|U|2384
6WDC|1|1|C|2385
6WDC|1|1|A|2386
6WDC|1|1|U|2387
6WDC|1|1|A|2388
6WDC|1|1|G|2389
6WDC|1|1|U|2390
6WDC|1|1|G|2391
6WDC|1|1|A|2392
6WDC|1|1|U|2393
6WDC|1|1|C|2394
6WDC|1|1|C|2395
*
6WDC|1|1|G|2421
6WDC|1|1|C|2422
6WDC|1|1|U|2423
6WDC|1|1|C|2424
6WDC|1|1|A|2425
6WDC|1|1|A|2426
6WDC|1|1|C|2427
6WDC|1|1|G|2428
6WDC|1|1|G|2429
6WDC|1|1|A|2430
6WDC|1|1|U|2431
6WDC|1|1|A|2432
6WDC|1|1|A|2433
6WDC|1|1|A|2434
6WDC|1|1|A|2435

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain 6

Transfer RNA; tRNA

Chain C

50S ribosomal protein L33

Chain E

50S ribosomal protein L35

Chain b

50S ribosomal protein L2

Chain l

50S ribosomal protein L15

Chain w

50S ribosomal protein L27

Chain x

50S ribosomal protein L28