J6_6WNT_001

3D structure

PDB id

6WNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit without free 5S rRNA and perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

6WNT|1|4|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6WNT|1|4|G|45
6WNT|1|4|G|46
*
6WNT|1|4|C|179
6WNT|1|4|G|180
6WNT|1|4|A|181
6WNT|1|4|A|182
6WNT|1|4|C|183
*
6WNT|1|4|G|214
6WNT|1|4|G|215
6WNT|1|4|A|216
6WNT|1|4|A|217
6WNT|1|4|A|218
6WNT|1|4|A|219
6WNT|1|4|G|220
6WNT|1|4|A|221
6WNT|1|4|A|222
6WNT|1|4|A|223
6WNT|1|4|U|224
*
6WNT|1|4|A|231
6WNT|1|4|G|232
6WNT|1|4|A|233
6WNT|1|4|U|234
6WNT|1|4|U|235
*
6WNT|1|4|A|262
6WNT|1|4|G|263
6WNT|1|4|C|264
6WNT|1|4|A|265
6WNT|1|4|G|266
*
6WNT|1|4|C|426
6WNT|1|4|U|427
6WNT|1|4|A|428
6WNT|1|4|A|429
6WNT|1|4|A|430
6WNT|1|4|U|431
6WNT|1|4|A|432
6WNT|1|4|C|433

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L34