Loop J6_6WNT

3D structure

PDB id: 6WNT (explore in PDB, NAKB, or RNA 3D Hub)
Description: 50S ribosomal subunit without free 5S rRNA and perturbed PTC
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å

Loop

Sequence: UUUA*UUUG*CU*AGCA*UCAUAGUGAUCC*GCUCAACGGAUAAAA
Length: 41 nucleotides
Bulged bases: 6WNT|1|4|U|2204, 6WNT|1|4|G|2556, 6WNT|1|4|A|2558, 6WNT|1|4|U|2559
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6WNT|1|4|U|2202
6WNT|1|4|U|2203
6WNT|1|4|U|2204
6WNT|1|4|A|2205
*
6WNT|1|4|U|2371
6WNT|1|4|U|2372
6WNT|1|4|U|2373
6WNT|1|4|G|2374
*
6WNT|1|4|C|2386
6WNT|1|4|U|2387
*
6WNT|1|4|A|2409
6WNT|1|4|G|2410
6WNT|1|4|C|2411
6WNT|1|4|A|2412
*
6WNT|1|4|U|2512
6WNT|1|4|C|2513
6WNT|1|4|A|2514
6WNT|1|4|U|2515
6WNT|1|4|A|2516
6WNT|1|4|G|2517
6WNT|1|4|U|2518
6WNT|1|4|G|2519
6WNT|1|4|A|2520
6WNT|1|4|U|2521
6WNT|1|4|C|2522
6WNT|1|4|C|2523
*
6WNT|1|4|G|2549
6WNT|1|4|C|2550
6WNT|1|4|U|2551
6WNT|1|4|C|2552
6WNT|1|4|A|2553
6WNT|1|4|A|2554
6WNT|1|4|C|2555
6WNT|1|4|G|2556
6WNT|1|4|G|2557
6WNT|1|4|A|2558
6WNT|1|4|U|2559
6WNT|1|4|A|2560
6WNT|1|4|A|2561
6WNT|1|4|A|2562
6WNT|1|4|A|2563

Current chains

Chain 4: 23s-5s joint ribosomal RNA

Nearby chains

Chain E: 50S ribosomal protein L35
Chain b: 50S ribosomal protein L2
Chain l: 50S ribosomal protein L15
Chain w: 50S ribosomal protein L27
Chain x: 50S ribosomal protein L28

J6_6WNT_002